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DNA_packaging_terminase_subunit_1
Euk-VirSuid_alphaherpesvirus_1
DNA_packaging_terminase_subunit_1__YP_068358__Suid_alphaherpesvirus_1__10345
Identity
- Accession:
- YP_068358 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_1
- Kingdom:
- euk
Quality
67.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Suid_alphaherpesvirus_1
TaxID: 10345
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 265-421
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05127.22 best | NAT10_TcmA_helicase | 24.3 | 3.70e-05 | 94.3% | 66.1% |
| PF03237.22 | Terminase_6N | 27.3 | 3.70e-06 | 91.7% | 64.6% |
| PF02500.23 | DNA_pack_N | 167.5 | 7.00e-49 | 61.8% | 36.2% |
| PF02499.23 | DNA_pack_C | 38.3 | 1.20e-09 | 22.3% | 10.3% |
D2
high
residues 429-476
D3
high
residues 504-727
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 266.7 | 4.40e-79 | 100.0% | 59.8% |
D4
medium
residues 29-49_114-143