←Back to structures

DNA_packaging_terminase_subunit_1

Euk-Vir

Human_betaherpesvirus_5

DNA_packaging_terminase_subunit_1__YP_081537__Human_betaherpesvirus_5__10359

Identity

Accession:: YP_081537 ↗
Protein ID:: DNA_packaging_terminase_subunit_1
Kingdom:: euk

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

Cluster

View cluster (63 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 443-672

PDB

Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	308.5	9.00e-92	99.6%	63.0%

D2 medium residues 5-64

PDB

D3 medium residues 110-204

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	94.0	1.80e-26	100.0%	33.2%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.62	44.0	4.22e-01	81.1%	64.5%
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	36.0	4.43e-01	83.2%	98.2%
1kyoF00	1.10.287.20	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain	0.59	38.0	4.27e-01	77.9%	85.1%
2chpA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.59	44.0	3.82e-01	80.0%	90.5%
2c2jA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	44.0	3.66e-01	80.0%	81.2%
3pjxA01	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.56	48.0	3.92e-01	96.8%	66.3%
1y8qC00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.55	35.0	2.48e-01	80.0%	19.6%
3vadA01	1.20.140.20	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain	0.55	44.0	3.80e-01	88.4%	61.5%
1jnrA02	3.90.700.10	Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	0.54	42.0	3.75e-01	82.1%	89.4%
5unhA02	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	37.0	2.71e-01	72.6%	84.4%
2q14B01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.51	42.0	3.25e-01	92.6%	79.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3477991	109.4.1.285 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSMD12-CSN4_N	0.60	45.0	3.22e-01	88.4%	25.9%
3961709	633.16.1.7 ↗	alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › Transposase_mut	0.59	38.0	3.73e-01	86.3%	59.0%
3808801	192.2.1.31 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1	0.57	41.0	3.60e-01	77.9%	49.3%
3408837	4033.1.1.5 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N	0.56	49.0	4.58e-01	100.0%	95.0%
3217915	5001.1.1.27 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre	0.53	43.0	3.11e-01	90.5%	66.3%
3956733	2484.1.1.199 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut	0.52	41.0	2.98e-01	87.4%	30.2%
3476351	604.4.1.0 ↗	alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP	0.52	38.0	3.97e-01	86.3%	89.4%
3198888	109.4.1.146 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load	0.51	41.0	2.81e-01	87.4%	25.6%

D4 medium residues 205-364

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03237.22 best	Terminase_6N	33.8	4.00e-08	88.8%	63.3%
PF02500.23	DNA_pack_N	163.9	9.20e-48	60.0%	36.2%
PF02499.23	DNA_pack_C	42.5	6.80e-11	24.4%	11.1%

D5 medium residues 365-442

PDB