DNA_packaging_terminase_subunit_2

Euk-Vir

Gallid_alphaherpesvirus_3

DNA_packaging_terminase_subunit_2__NP_066860__Gallid_alphaherpesvirus_3__35250

Identity

72.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_3

TaxID: 35250

View cluster (77 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 241-269_334-414

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_053077__Equid_alphaherpesvirus_1__10326__D247-267_332-417

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	70.9	9.20e-20	97.3%	13.3%

D2 medium residues 567-592_704-779

PDB

Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6sjqA00	3.10.20.650	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.56	29.0	2.78e-01	100.0%	43.5%
2w9jA00	3.30.720.10	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1	0.53	36.0	4.09e-01	93.1%	98.6%
2ffgA00	3.30.720.20	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797	0.53	39.0	4.32e-01	76.5%	98.8%
3c4bA02	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.51	33.0	3.86e-01	79.4%	100.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4431929	4100.1.1.4 ↗	a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150	0.63	34.0	4.17e-01	70.6%	83.1%
3170899	7502.1.1.0 ↗	a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS	0.60	43.0	4.31e-01	75.5%	79.0%
3927599	2007.1.13.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase	0.59	43.0	3.79e-01	75.5%	76.6%
3433431	2005.1.1.3 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp	0.58	28.0	2.42e-01	74.5%	29.1%
4417445	2004.1.1.571 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, MMR_HSR1	0.53	41.0	3.40e-01	83.3%	87.6%
3905081	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.52	40.0	3.76e-01	82.4%	78.4%
3502798	2498.1.1.4 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin	0.51	39.0	2.93e-01	82.4%	90.5%