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DNA_packaging_terminase_subunit_2

Euk-Vir

Meleagrid_alphaherpesvirus_1

DNA_packaging_terminase_subunit_2__NP_073322__Meleagrid_alphaherpesvirus_1__37108

Identity

Accession:: NP_073322 ↗
Protein ID:: DNA_packaging_terminase_subunit_2
Kingdom:: euk

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Meleagrid_alphaherpesvirus_1

TaxID: 37108

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-124

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	95.7	2.80e-27	92.2%	15.8%

D2 medium residues 125-221

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	118.3	4.20e-34	100.0%	14.5%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4c1sA00	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.63	49.0	3.36e-01	86.6%	59.5%
2uvaG01	1.20.1050.120	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.57	43.0	3.89e-01	80.4%	80.1%
2bbhA01	3.30.460.20	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like	0.57	33.0	2.90e-01	79.4%	36.4%
4djhA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	41.0	2.97e-01	87.6%	75.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3548818	5001.1.1.111 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw	0.67	47.0	3.26e-01	73.2%	47.4%
3530542	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.61	43.0	3.02e-01	73.2%	48.8%
3415024	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.61	41.0	2.89e-01	70.1%	44.7%
3932224	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.60	42.0	2.98e-01	73.2%	50.6%
None	—		0.59	41.0	2.87e-01	71.1%	60.6%
4004088	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.57	21.0	3.15e-01	73.2%	72.5%
4015612	616.1.1.0 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain	0.56	38.0	4.01e-01	78.4%	78.8%
3590189	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.56	39.0	3.31e-01	71.1%	75.0%
3240839	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.55	38.0	2.71e-01	73.2%	57.0%
4024119	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	40.0	3.04e-01	86.6%	64.3%

D3 medium residues 543-585_701-780

PDB

Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697

D4 medium residues 586-700

PDB

Domain cluster: rep: orf7__YP_009044394__Alcelaphine_gammaherpesvirus_2__138184__D511-616

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	131.3	4.90e-38	80.0%	14.0%