DNA_packaging_terminase_subunit_2

Euk-Vir

Panine_betaherpesvirus_2

DNA_packaging_terminase_subunit_2__NP_612700__Panine_betaherpesvirus_2__188763

Identity

72.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Panine_betaherpesvirus_2

TaxID: 188763

View cluster (77 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-110

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	120.3	1.00e-34	97.3%	15.7%

D2 medium residues 111-210

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_007969816__Elephantid_betaherpesvirus_1__146015__D118-183_479-495

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	144.8	4.00e-42	100.0%	15.2%

D3 medium residues 230-266_319-361

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7yh2B01	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.65	43.0	3.50e-01	93.8%	36.0%
3dv9A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.56	37.0	4.00e-01	100.0%	80.0%
3ce2A03	1.10.1370.20	Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › Oligoendopeptidase f, C-terminal domain	0.55	47.0	3.16e-01	100.0%	81.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3677427	101.1.1.66 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5	0.58	32.0	2.81e-01	98.8%	35.0%
4203629	4044.1.1.1 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane	0.57	49.0	4.50e-01	98.8%	86.4%
4605041	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.52	33.0	3.26e-01	98.8%	61.2%

D4 medium residues 267-318_362-407_510-557

PDB

Domain cluster: rep: E56__YP_007016463__Murid_betaherpesvirus_8__1261657__D268-310_374-406_480-526

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	45.8	3.50e-12	36.3%	8.8%
PF01366.24	PRTP	38.2	7.30e-10	34.2%	7.5%
PF01366.24	PRTP	48.4	6.00e-13	33.6%	7.3%

D5 medium residues 575-750

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_081515__Human_betaherpesvirus_5__10359__D575-765

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	163.4	9.40e-48	60.8%	16.3%