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DNA_packaging_terminase_subunit_2
Euk-VirEquid_alphaherpesvirus_9
DNA_packaging_terminase_subunit_2__YP_002333513__Equid_alphaherpesvirus_9__55744
Identity
- Accession:
- YP_002333513 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_2
- Kingdom:
- euk
Quality
71.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_9
TaxID: 55744
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-121
Domain cluster:
rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 76.9 | 1.40e-21 | 95.5% | 15.7% |
D2
medium
residues 122-198
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__YP_009253944__Macaca_nemestrina_herpesvirus_7__1846169__D111-173
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 76.5 | 1.90e-21 | 100.0% | 11.7% |
D3
medium
residues 230-272_331-420_529-552
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__NP_040153__Human_alphaherpesvirus_3__10335__D231-270_321-432_480-524
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 72.9 | 2.30e-20 | 72.6% | 13.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l6xA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 37.0 | 3.27e-01 | 72.0% | 74.0% |
| 4m5bA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.53 | 39.0 | 3.55e-01 | 77.7% | 100.0% |
| 1pw4A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 40.0 | 3.69e-01 | 80.9% | 88.5% |
| 8sbeA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 40.0 | 3.70e-01 | 80.9% | 94.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4608311 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.57 | 45.0 | 3.62e-01 | 82.2% | 71.9% |
| 3307607 | 2007.2.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N | 0.52 | 41.0 | 3.10e-01 | 81.5% | 97.4% |
| 3839927 | 1151.1.1.0 ↗ | alpha bundles › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A | 0.51 | 39.0 | 3.39e-01 | 79.0% | 65.0% |
| 3272175 | 180.1.1.0 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase | 0.50 | 35.0 | 2.93e-01 | 70.7% | 88.8% |
D4
medium
residues 553-590_702-769