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DNA_packaging_terminase_subunit_2

Euk-Vir

Equid_alphaherpesvirus_3

DNA_packaging_terminase_subunit_2__YP_009054935__Equid_alphaherpesvirus_3__80341

Identity

Accession:
YP_009054935 ↗
Protein ID:
DNA_packaging_terminase_subunit_2
Kingdom:
euk

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_3

TaxID: 80341

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-210
PDB
Domain cluster: rep: HSV_ICP18.5_homolog__YP_214068__Murid_betaherpesvirus_1__10366__D5-201
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01366.24 best PRTP 207.4 4.40e-61 97.5% 29.9%
D2 medium residues 240-271_328-381
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.77 48.0 5.89e-01 80.2% 98.2%
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.73 46.0 4.54e-01 76.7% 59.8%
2rfbA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.66 46.0 3.11e-01 73.3% 60.7%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.65 47.0 4.70e-01 82.6% 74.4%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.64 46.0 3.85e-01 76.7% 57.7%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 4.52e-01 87.2% 80.4%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 4.44e-01 87.2% 77.8%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 4.35e-01 87.2% 70.8%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.57 39.0 3.47e-01 84.9% 48.4%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.55 40.0 4.26e-01 77.9% 92.2%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.55 42.0 3.83e-01 82.6% 70.8%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 39.0 4.04e-01 79.1% 79.3%
4ag6A02 1.10.8.730 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 44.0 4.13e-01 89.5% 93.6%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.54 40.0 4.28e-01 84.9% 91.8%
4nlbA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.54 41.0 3.99e-01 86.0% 73.4%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 41.0 3.74e-01 82.6% 84.6%
6bldA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 45.0 2.87e-01 93.0% 65.9%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 41.0 3.89e-01 89.5% 68.8%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.53 38.0 3.88e-01 84.9% 77.0%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 42.0 3.86e-01 89.5% 69.9%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.51 33.0 3.18e-01 93.0% 56.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 40.0 3.80e-01 90.7% 71.8%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 38.0 3.60e-01 80.2% 66.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3423597 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.69 43.0 4.89e-01 77.9% 83.1%
4034226 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.67 47.0 4.91e-01 76.7% 80.0%
3490509 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.65 50.0 3.33e-01 82.6% 47.1%
4034270 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.64 46.0 4.82e-01 76.7% 81.2%
4365789 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.60 43.0 4.24e-01 76.7% 71.1%
5076381 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 46.0 4.39e-01 87.2% 77.0%
3669993 142.1.1.22 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C 0.55 40.0 4.10e-01 76.7% 84.7%
5004793 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 41.0 4.24e-01 77.9% 100.0%
3583793 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.55 43.0 3.86e-01 91.9% 58.5%
3372157 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.55 39.0 3.96e-01 77.9% 76.5%
3643902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.54 45.0 3.90e-01 89.5% 87.7%
3592779 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 41.0 4.08e-01 89.5% 83.3%
3493322 2006.1.1.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.51 37.0 2.56e-01 74.4% 27.1%
D3 medium residues 554-579_708-758
PDB
Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697
D4 medium residues 580-707
PDB
Domain cluster: rep: orf7__YP_009044394__Alcelaphine_gammaherpesvirus_2__138184__D511-616
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01366.24 best PRTP 115.9 2.30e-33 68.8% 13.3%