DNA_packaging_terminase_subunit_2

Euk-Vir

Macropodid_alphaherpesvirus_1

DNA_packaging_terminase_subunit_2__YP_009227261__Macropodid_alphaherpesvirus_1__137443

Identity

80.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macropodid_alphaherpesvirus_1

TaxID: 137443

View cluster (77 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-127

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	92.8	2.10e-26	89.5%	16.8%

D2 medium residues 128-251_517-545

PDB

Domain cluster: rep: GP56__YP_007417831__Caviid_betaherpesvirus_2__33706__D136-147_175-227_482-509

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	161.0	4.80e-47	81.7%	19.1%

D3 medium residues 252-271_300-378

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_053077__Equid_alphaherpesvirus_1__10326__D247-267_332-417

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	43.6	1.70e-11	95.0%	12.0%

D4 medium residues 379-429_482-516

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2_UL28__YP_009230159__Leporid_alphaherpesvirus_4__481315__D318-334_397-443_483-524

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	45.6	4.20e-12	59.3%	7.6%
PF01366.24	PRTP	37.1	1.60e-09	47.7%	5.6%

D5 medium residues 546-572_692-761

PDB

Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697

D6 medium residues 573-691

PDB

Domain cluster: rep: orf7__YP_009044394__Alcelaphine_gammaherpesvirus_2__138184__D511-616

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	123.1	1.50e-35	78.1%	13.7%