←Back to structures

DNA_packaging_terminase_subunit_2

Euk-Vir

Spheniscid_alphaherpesvirus_1

DNA_packaging_terminase_subunit_2__YP_009342375__Spheniscid_alphaherpesvirus_1__2560777

Identity

Accession:
YP_009342375 ↗
Protein ID:
DNA_packaging_terminase_subunit_2
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-129
PDB
Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01366.24 best PRTP 98.4 4.40e-28 94.2% 17.2%
D2 medium residues 237-271_351-395
PDB
Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_009054935__Equid_alphaherpesvirus_3__80341__D240-271_328-381
D3 medium residues 396-425_481-529
PDB
D4 medium residues 530-584_691-776
PDB
Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01366.24 best PRTP 39.6 2.70e-10 43.3% 8.8%