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DNA_packaging_terminase_subunit_2
Euk-VirCervid_alphaherpesvirus_3
DNA_packaging_terminase_subunit_2__YP_010087574__Cervid_alphaherpesvirus_3__2115790
Identity
- Accession:
- YP_010087574 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_2
- Kingdom:
- euk
Quality
74.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Cervid_alphaherpesvirus_3
TaxID: 2115790
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-165
Domain cluster:
rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 85.1 | 4.70e-24 | 100.0% | 18.3% |
D2
medium
residues 604-686_745-816
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__NP_944401__Psittacid_alphaherpesvirus_1__50294__D629-677_789-859
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 110.2 | 1.20e-31 | 55.5% | 12.3% |
D3
medium
residues 687-744
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wmwB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.73 | 56.0 | 3.49e-01 | 82.8% | 34.8% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.69 | 47.0 | 4.04e-01 | 70.7% | 66.3% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.69 | 52.0 | 4.49e-01 | 82.8% | 53.4% |