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DNA_packaging_terminase_subunit_2
Euk-VirEquid_alphaherpesvirus_1
DNA_packaging_terminase_subunit_2__YP_053077__Equid_alphaherpesvirus_1__10326
Identity
- Accession:
- YP_053077 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_2
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_1
TaxID: 10326
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-121
Domain cluster:
rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 76.8 | 1.50e-21 | 96.4% | 15.7% |
D2
medium
residues 122-194_229-246_533-551
Domain cluster:
rep: GP56__YP_007417831__Caviid_betaherpesvirus_2__33706__D136-147_175-227_482-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 76.6 | 1.80e-21 | 73.6% | 11.6% |
D3
medium
residues 247-267_332-417
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 73.0 | 2.10e-20 | 97.2% | 14.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h6gA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 41.0 | 3.88e-01 | 75.7% | 94.4% |
| 5bqnA02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.55 | 49.0 | 3.43e-01 | 100.0% | 63.2% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.52 | 38.0 | 3.14e-01 | 74.8% | 95.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483458 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.56 | 42.0 | 4.26e-01 | 79.4% | 95.4% |
| 3795425 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.56 | 41.0 | 4.38e-01 | 76.6% | 98.9% |
| 5051865 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 38.0 | 3.62e-01 | 70.1% | 91.2% |
| 5025118 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.54 | 42.0 | 4.35e-01 | 81.3% | 99.0% |
| 4426206 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.54 | 28.0 | 3.02e-01 | 78.5% | 56.7% |
| 4018342 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 37.0 | 3.71e-01 | 72.9% | 84.5% |
| 5046289 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.53 | 39.0 | 3.71e-01 | 78.5% | 80.8% |
| 4329065 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.52 | 36.0 | 4.02e-01 | 82.2% | 90.6% |
| 3915070 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.52 | 36.0 | 3.51e-01 | 78.5% | 65.2% |
| 3252459 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.52 | 43.0 | 3.58e-01 | 91.6% | 81.5% |
| 3903368 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.52 | 38.0 | 3.41e-01 | 77.6% | 67.3% |
D4
medium
residues 552-590_702-769
D5
medium
residues 591-701
Domain cluster:
rep: orf7__YP_009044394__Alcelaphine_gammaherpesvirus_2__138184__D511-616
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 118.5 | 3.60e-34 | 79.3% | 13.1% |