DNA_packaging_terminase_subunit_2

Euk-Vir

Human_betaherpesvirus_5

DNA_packaging_terminase_subunit_2__YP_081515__Human_betaherpesvirus_5__10359

Identity

69.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

View cluster (77 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-112

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	121.0	6.30e-35	98.2%	15.7%

D2 medium residues 113-178

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_009253944__Macaca_nemestrina_herpesvirus_7__1846169__D111-173

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	86.3	1.90e-24	100.0%	10.1%

D3 medium residues 179-231

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	66.1	2.60e-18	100.0%	6.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4mj7B00	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.54	41.0	3.07e-01	86.8%	70.6%

D4 medium residues 233-391

PDB

D5 medium residues 575-765

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	172.0	2.30e-50	63.3%	18.3%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ckdA02	1.20.58.360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines	0.53	29.0	3.52e-01	80.1%	78.2%
3ezhA00	1.20.120.960	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain	0.52	29.0	3.63e-01	88.0%	89.5%
2i88A00	1.10.490.30	Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin	0.52	36.0	3.70e-01	98.4%	73.6%
3h4cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.52	27.0	3.67e-01	82.7%	99.0%
2ra1A01	1.20.58.790	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	24.0	3.34e-01	77.0%	87.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3600676	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	29.0	3.68e-01	83.8%	90.9%
3988116	1076.1.1.4 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease	0.51	37.0	3.70e-01	74.3%	87.5%