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DNA_packaging_terminase_subunit_2
Euk-VirCercopithecine_alphaherpesvirus_2
DNA_packaging_terminase_subunit_2__YP_164471__Cercopithecine_alphaherpesvirus_2__10317
Identity
- Accession:
- YP_164471 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_2
- Kingdom:
- euk
Quality
77.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Cercopithecine_alphaherpesvirus_2
TaxID: 10317
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 257-395
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__YP_053077__Equid_alphaherpesvirus_1__10326__D247-267_332-417
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 88.2 | 5.40e-25 | 100.0% | 21.2% |
D2
medium
residues 30-145
Domain cluster:
rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 105.6 | 2.80e-30 | 100.0% | 17.2% |
D3
medium
residues 146-252_534-559
Domain cluster:
rep: GP56__YP_007417831__Caviid_betaherpesvirus_2__33706__D136-147_175-227_482-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 149.3 | 1.70e-43 | 81.2% | 16.5% |
D4
medium
residues 396-435_495-533
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__NP_851888__Macacine_alphaherpesvirus_1__10325__D398-429_497-533
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 39.4 | 3.10e-10 | 53.2% | 6.4% |
| PF01366.24 | PRTP | 40.9 | 1.10e-10 | 50.6% | 5.9% |
D5
medium
residues 560-587_702-776