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DNA_packaging_terminase_subunit_2
Euk-VirHuman_gammaherpesvirus_4
DNA_packaging_terminase_subunit_2__YP_401715__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401715 ↗
- Protein ID:
- DNA_packaging_terminase_subunit_2
- Kingdom:
- euk
Quality
79.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 488-517_577-679
Domain cluster:
rep: DNA_packaging_terminase_subunit_2__YP_010085884__Wood_mouse_herpesvirus__432370__D461-483_571-651
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.64 | 29.0 | 4.19e-01 | 85.7% | 93.4% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.51 | 36.0 | 3.67e-01 | 83.5% | 72.9% |
| 3lxuX06 | 1.25.40.710 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 36.0 | 2.90e-01 | 71.4% | 80.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5045348 | 604.34.1.0 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase | 0.62 | 30.0 | 3.71e-01 | 84.2% | 71.8% |
| 3786197 | 601.1.1.86 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF8314 | 0.51 | 40.0 | 3.62e-01 | 85.0% | 76.2% |
D2
medium
residues 1-92
Domain cluster:
rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 72.8 | 2.50e-20 | 92.4% | 12.5% |
D3
medium
residues 93-167_202-234_466-487
Domain cluster:
rep: ORF3__NP_733855__Callitrichine_gammaherpesvirus_3__106331__D95-203_456-481
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01366.24 best | PRTP | 84.2 | 8.60e-24 | 56.9% | 10.1% |