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DNA_packaging_terminase_subunit
Euk-VirBubaline_alphaherpesvirus_1
DNA_packaging_terminase_subunit__YP_009664663__Bubaline_alphaherpesvirus_1__202910
Identity
- Accession:
- YP_009664663 ↗
- Protein ID:
- DNA_packaging_terminase_subunit
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Bubaline_alphaherpesvirus_1
TaxID: 202910
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 496-728
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02499.23 best | DNA_pack_C | 280.3 | 3.30e-83 | 99.1% | 59.0% |
D2
medium
residues 78-109_155-175_202-250
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02500.23 best | DNA_pack_N | 73.8 | 2.60e-20 | 87.2% | 29.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wauA01 | 1.20.1310.20 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain | 0.59 | 46.0 | 3.98e-01 | 82.4% | 80.0% |
| 4lqkA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.56 | 44.0 | 4.06e-01 | 98.0% | 65.9% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.52 | 39.0 | 3.97e-01 | 80.4% | 87.1% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 39.0 | 3.79e-01 | 80.4% | 83.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3720036 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 43.0 | 3.74e-01 | 80.4% | 50.3% |
| 3233462 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 38.0 | 3.61e-01 | 76.5% | 82.8% |
| 3724953 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 38.0 | 3.35e-01 | 75.5% | 65.8% |
| 3652633 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.53 | 39.0 | 3.63e-01 | 77.5% | 66.9% |
| 4397672 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.52 | 43.0 | 3.39e-01 | 89.2% | 90.2% |
| 5018283 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.51 | 36.0 | 3.70e-01 | 78.4% | 75.0% |
| 3263668 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 37.0 | 3.73e-01 | 76.5% | 78.1% |
| 3913809 | 150.1.1.101 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL | 0.51 | 37.0 | 3.31e-01 | 77.5% | 84.7% |
D3
medium
residues 251-412
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 28.7 | 1.40e-06 | 92.6% | 65.1% |
| PF02500.23 | DNA_pack_N | 173.3 | 1.20e-50 | 59.9% | 36.2% |
| PF02499.23 | DNA_pack_C | 54.3 | 1.70e-14 | 24.7% | 11.4% |
D4
medium
residues 413-470