←Back to structures
DNA_photolyase_2
Euk-VirApocheima_cinerarium_nucleopolyhedrovirus
DNA_photolyase_2__YP_006607781__Apocheima_cinerarium_nucleopolyhedrovirus__307461
Identity
- Accession:
- YP_006607781 ↗
- Protein ID:
- DNA_photolyase_2
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Apocheima_cinerarium_nucleopolyhedrovirus
TaxID: 307461
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 255-394
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xryA03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.85 | 82.0 | 8.20e-01 | 100.0% | 99.3% |
| 7ud0A01 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.77 | 59.0 | 5.24e-01 | 84.3% | 58.7% |
| 1owlA03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.76 | 64.0 | 5.88e-01 | 100.0% | 69.9% |
| 1u3dA03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.75 | 64.0 | 5.69e-01 | 100.0% | 65.8% |
| 3fy4C03 | 1.10.579.10 | Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 0.73 | 62.0 | 5.31e-01 | 100.0% | 58.5% |
| 2qeuB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.62 | 36.0 | 3.77e-01 | 70.7% | 60.9% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.56 | 39.0 | 3.92e-01 | 70.0% | 72.7% |
| 2b1eA02 | 1.20.1310.30 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › | 0.55 | 38.0 | 3.70e-01 | 70.0% | 75.5% |
| 4q69B00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 39.0 | 2.74e-01 | 72.9% | 81.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3334858 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.86 | 82.0 | 6.43e-01 | 100.0% | 52.8% |
| 4027389 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.85 | 81.0 | 6.38e-01 | 100.0% | 53.8% |
| 4002366 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.84 | 81.0 | 6.46e-01 | 100.0% | 57.1% |
| 3284493 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.77 | 64.0 | 5.20e-01 | 100.0% | 49.8% |
| 4964856 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.76 | 63.0 | 4.84e-01 | 100.0% | 41.4% |
| 4076876 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.75 | 63.0 | 4.88e-01 | 100.0% | 42.4% |
| 4378285 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.75 | 63.0 | 5.15e-01 | 100.0% | 50.0% |
| 1391248 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.74 | 62.0 | 5.03e-01 | 100.0% | 48.8% |
| 4030829 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.74 | 63.0 | 5.00e-01 | 100.0% | 46.3% |
| 3957091 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.74 | 64.0 | 5.15e-01 | 100.0% | 49.2% |
| 4496124 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.74 | 63.0 | 4.78e-01 | 100.0% | 41.0% |
| 3351834 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.73 | 62.0 | 4.67e-01 | 100.0% | 39.4% |
| 3881650 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.73 | 62.0 | 4.77e-01 | 100.0% | 43.1% |
| 3965738 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.72 | 59.0 | 4.90e-01 | 98.6% | 51.7% |
| 3271098 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.69 | 59.0 | 5.13e-01 | 90.0% | 65.9% |
| 3238748 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.68 | 58.0 | 5.03e-01 | 90.0% | 64.8% |
| 3502534 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.66 | 55.0 | 4.81e-01 | 90.0% | 70.8% |
| 3662081 | 109.4.1.94 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANTH | 0.57 | 34.0 | 3.15e-01 | 70.0% | 44.6% |
| 5002992 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.56 | 39.0 | 3.57e-01 | 71.4% | 97.9% |
| 3698531 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.56 | 36.0 | 2.36e-01 | 80.7% | 14.1% |
| 4319342 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.54 | 38.0 | 3.50e-01 | 71.4% | 95.7% |
| 3942768 | 109.51.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › TssA helical domains › TssA helical domains › ImpA_N | 0.53 | 35.0 | 3.71e-01 | 72.9% | 77.5% |
| 4934584 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.52 | 38.0 | 3.08e-01 | 77.1% | 56.7% |
| 4594388 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.52 | 39.0 | 2.86e-01 | 79.3% | 79.8% |
D2
medium
residues 84-120_163-248
Domain cluster:
rep: photolyase__YP_009046150__Penguinpox_virus__648998__D184-204_218-318