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DNA_pol
Euk-VirClostera_anachoreta_granulovirus
DNA_pol__YP_004376303__Clostera_anachoreta_granulovirus__283675
Identity
- Accession:
- YP_004376303 ↗
- Protein ID:
- DNA_pol
- Kingdom:
- euk
Quality
83.4
mean pLDDT
Taxonomy
TaxID: 283675
Cluster
View cluster (158 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-199
Domain cluster:
rep: DNA_polymerase__YP_010084862__Shrimp_hemocyte_iridescent_virus__2039780__D2-200
D2
medium
residues 203-293
Domain cluster:
rep: DNA_polymerase_elongation_subunit_family_B__YP_010088005__Lymphocystis_disease_virus_4__2704413__D159-241
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03104.26 best | DNA_pol_B_exo1 | 36.5 | 4.90e-09 | 100.0% | 35.9% |
D3
medium
residues 427-490_514-549_572-658
Domain cluster:
rep: DNA_polymerase__YP_009182295__Diatraea_saccharalis_granulovirus__1675862__D418-475_477-636
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00136.27 best | DNA_pol_B | 36.4 | 3.90e-09 | 47.6% | 22.7% |
D4
medium
residues 793-826_903-1037
Domain cluster:
rep: DNA_pol__YP_009011170__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D790-807_882-1000
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 38.0 | 4.17e-01 | 82.2% | 81.0% |
| 3feyA02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 38.0 | 3.71e-01 | 100.0% | 58.3% |
| 1e3pA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.56 | 27.0 | 3.62e-01 | 97.0% | 89.2% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.54 | 33.0 | 4.09e-01 | 86.4% | 100.0% |
| 7cc7A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 33.0 | 3.07e-01 | 86.4% | 45.7% |
| 5m9dA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 36.0 | 3.91e-01 | 82.2% | 84.1% |
| 1usmA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.51 | 22.0 | 3.06e-01 | 92.9% | 83.1% |
| 4atgA00 | 1.25.40.770 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain | 0.50 | 41.0 | 3.93e-01 | 100.0% | 74.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4976912 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.65 | 27.0 | 3.75e-01 | 96.4% | 76.5% |
| 3684579 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 39.0 | 3.89e-01 | 81.7% | 60.0% |
| 5076243 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.60 | 32.0 | 4.26e-01 | 78.7% | 97.8% |
| 4108961 | 109.4.1.309 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med12 | 0.58 | 51.0 | 3.02e-01 | 95.3% | 47.9% |
| 3681983 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 33.0 | 4.12e-01 | 78.7% | 93.0% |
| 3317246 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.55 | 30.0 | 3.56e-01 | 78.1% | 77.3% |
| 3303057 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.53 | 38.0 | 3.07e-01 | 100.0% | 38.5% |
| 3484112 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 4.09e-01 | 83.4% | 86.5% |
| 3988991 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.51 | 27.0 | 3.61e-01 | 91.1% | 96.7% |
| 4518433 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.50 | 28.0 | 3.61e-01 | 91.1% | 98.9% |
| 4943201 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.50 | 26.0 | 3.56e-01 | 91.1% | 100.0% |
| 3603904 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.50 | 27.0 | 3.57e-01 | 91.7% | 97.8% |
D5
medium
residues 827-902
Domain cluster:
rep: DNA_polymerase__YP_009513145__Agrotis_segetum_granulovirus__10464__D860-955