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DNA_polyermase
Euk-VirPsittacine_adenovirus_3
DNA_polyermase__YP_009112716__Psittacine_adenovirus_3__1580497
Identity
- Accession:
- YP_009112716 ↗
- Protein ID:
- DNA_polyermase
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Barthadenovirus›
Psittacine_adenovirus_3
TaxID: 1580497
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-128
Domain cluster:
rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D69-178
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.67 | 54.0 | 4.97e-01 | 86.8% | 94.7% |
| 5jzeA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.66 | 52.0 | 4.66e-01 | 83.3% | 87.4% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.66 | 51.0 | 4.62e-01 | 83.3% | 86.8% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 52.0 | 4.90e-01 | 87.7% | 96.5% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 50.0 | 4.41e-01 | 83.3% | 89.9% |
| 5cqgA02 | 3.10.10.20 | Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › | 0.57 | 30.0 | 3.61e-01 | 89.5% | 77.8% |
| 6vp6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 27.0 | 3.20e-01 | 91.2% | 71.1% |
| 3lq9A00 | 3.90.470.40 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › RTP801-like | 0.52 | 40.0 | 3.87e-01 | 80.7% | 80.5% |
| 2fm8B00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 33.0 | 3.28e-01 | 100.0% | 60.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3401495 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.67 | 54.0 | 4.77e-01 | 86.8% | 79.4% |
| 1891831 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.66 | 52.0 | 4.66e-01 | 83.3% | 87.4% |
| 3220404 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.65 | 51.0 | 4.48e-01 | 83.3% | 76.5% |
| 2429118 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.65 | 51.0 | 4.52e-01 | 83.3% | 84.1% |
| 3993036 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.65 | 53.0 | 5.02e-01 | 86.8% | 97.8% |
| 2429117 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.64 | 50.0 | 4.54e-01 | 83.3% | 86.5% |
| 2429119 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.64 | 50.0 | 4.41e-01 | 83.3% | 89.9% |
| 2429116 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.64 | 50.0 | 4.51e-01 | 83.3% | 87.2% |
| 3245933 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 51.0 | 4.83e-01 | 85.1% | 100.0% |
| 3212277 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 53.0 | 4.59e-01 | 91.2% | 83.9% |
| 3935022 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.64 | 52.0 | 4.66e-01 | 86.8% | 85.8% |
| 3897776 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.63 | 52.0 | 4.08e-01 | 88.6% | 57.5% |
| 3804954 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 44.0 | 4.65e-01 | 71.9% | 96.0% |
| 3869291 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.62 | 51.0 | 4.50e-01 | 90.4% | 81.7% |
| 3237277 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 48.0 | 4.39e-01 | 91.2% | 91.3% |
| 3112292 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.52 | 31.0 | 3.58e-01 | 90.4% | 85.3% |
| 4946624 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 35.0 | 2.81e-01 | 71.9% | 82.1% |
D2
high
residues 155-390_480-517
Domain cluster:
rep: DNA_polymerase__YP_004191813__Fowl_aviadenovirus_E__190065__D141-375
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03175.19 best | DNA_pol_B_2 | 33.7 | 2.90e-08 | 26.3% | 14.3% |
D3
medium
residues 391-479
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03175.19 best | DNA_pol_B_2 | 82.2 | 5.50e-23 | 100.0% | 19.2% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wteB01 | 1.10.3250.10 | Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 | 0.65 | 34.0 | 2.85e-01 | 84.3% | 30.6% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 34.0 | 4.22e-01 | 94.4% | 87.5% |
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.60 | 44.0 | 3.63e-01 | 93.3% | 44.7% |
| 3frqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 42.0 | 3.36e-01 | 85.4% | 36.4% |
| 3r6nB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 40.0 | 2.96e-01 | 91.0% | 28.1% |
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.56 | 48.0 | 3.77e-01 | 94.4% | 97.3% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 38.0 | 3.92e-01 | 98.9% | 75.0% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 37.0 | 3.75e-01 | 98.9% | 69.3% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 34.0 | 3.53e-01 | 95.5% | 67.1% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 31.0 | 3.02e-01 | 95.5% | 52.0% |
| 7eptR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 44.0 | 3.35e-01 | 100.0% | 89.4% |
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.51 | 36.0 | 3.37e-01 | 73.0% | 65.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4432746 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.65 | 37.0 | 2.82e-01 | 94.4% | 25.6% |
| 3245365 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.62 | 43.0 | 3.54e-01 | 73.0% | 46.5% |
| None | — | 0.58 | 51.0 | 3.25e-01 | 100.0% | 63.9% | |
| 4402657 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.55 | 41.0 | 3.28e-01 | 78.7% | 51.4% |
| 3898186 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 37.0 | 3.05e-01 | 70.8% | 44.0% |
| 3480438 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.54 | 37.0 | 2.96e-01 | 71.9% | 91.8% |
| 132993 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 38.0 | 3.74e-01 | 71.9% | 85.3% |
| 5037104 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.54 | 45.0 | 4.03e-01 | 91.0% | 98.4% |
| 3683201 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.53 | 41.0 | 2.53e-01 | 84.3% | 17.9% |
| 3504003 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.52 | 38.0 | 3.68e-01 | 78.7% | 88.5% |
| 3582590 | 3291.1.1.9 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 | 0.51 | 46.0 | 4.14e-01 | 100.0% | 86.7% |
D4
medium
residues 521-736_830-860
Domain cluster:
rep: DNA_polymerase__YP_002213831__Human_mastadenovirus_B__108098__D647-666_688-846_965-977
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03175.19 best | DNA_pol_B_2 | 258.1 | 2.50e-76 | 93.9% | 43.6% |
D5
medium
residues 737-766_806-829