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DNA_polymerase-beta_AP_pol
Euk-VirAdoxophyes_honmai_entomopoxvirus_L
DNA_polymerase-beta_AP_pol__YP_008003963__Adoxophyes_honmai_entomopoxvirus_L__1293540
Identity
- Accession:
- YP_008003963 ↗
- Protein ID:
- DNA_polymerase-beta_AP_pol
- Kingdom:
- euk
Quality
83.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Betaentomopoxvirus›
Adoxophyes_honmai_entomopoxvirus_'L'
TaxID: 1293540
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-284
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01261.31 best | AP_endonuc_2 | 44.3 | 2.70e-11 | 84.4% | 67.5% |
CATH (72)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ki3A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.84 | 81.0 | 7.82e-01 | 100.0% | 99.7% |
| 1qtwA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.82 | 79.0 | 7.77e-01 | 100.0% | 97.5% |
| 2x7vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.82 | 79.0 | 7.74e-01 | 100.0% | 98.6% |
| 1xp3A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.82 | 79.0 | 7.59e-01 | 100.0% | 95.3% |
| 3aamA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.80 | 76.0 | 7.65e-01 | 100.0% | 99.3% |
| 3qxbA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.78 | 75.0 | 7.25e-01 | 100.0% | 98.3% |
| 3wqoA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.78 | 74.0 | 7.40e-01 | 100.0% | 97.8% |
| 1bxbA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.78 | 75.0 | 6.50e-01 | 100.0% | 79.1% |
| 1k77A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.74 | 68.0 | 6.96e-01 | 99.6% | 99.2% |
| 4jhmA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.73 | 50.0 | 5.17e-01 | 95.6% | 72.4% |
| 2hk0A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.73 | 70.0 | 6.81e-01 | 100.0% | 99.0% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.72 | 68.0 | 6.83e-01 | 100.0% | 97.8% |
| 3p6lA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.72 | 64.0 | 6.55e-01 | 100.0% | 95.0% |
| 4k3zA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.72 | 68.0 | 6.44e-01 | 100.0% | 95.8% |
| 3tc3B00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.71 | 68.0 | 6.64e-01 | 100.0% | 97.9% |
| 5tnvA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.69 | 66.0 | 6.30e-01 | 100.0% | 96.4% |
| 3wqcA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.68 | 51.0 | 5.57e-01 | 97.4% | 91.9% |
| 3oyzA01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.68 | 58.0 | 5.88e-01 | 95.2% | 90.3% |
| 4s3jB02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 57.0 | 5.74e-01 | 95.6% | 87.5% |
| 1rvkA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.67 | 56.0 | 5.69e-01 | 100.0% | 87.5% |
| 3l5aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 61.0 | 5.37e-01 | 96.3% | 82.9% |
| 3mbdA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 61.0 | 5.70e-01 | 100.0% | 93.8% |
| 2o7sA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 53.0 | 5.65e-01 | 100.0% | 96.1% |
| 1lqaA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.65 | 61.0 | 5.62e-01 | 100.0% | 89.9% |
| 1xx1A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.65 | 59.0 | 5.86e-01 | 95.9% | 98.9% |
| 3n4eA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.65 | 52.0 | 5.32e-01 | 95.2% | 85.2% |
| 1d2kA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 61.0 | 5.67e-01 | 100.0% | 90.0% |
| 1c3fA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 53.0 | 5.42e-01 | 96.3% | 87.5% |
| 1aq0A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 59.0 | 5.66e-01 | 98.9% | 100.0% |
| 3qokA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 60.0 | 5.80e-01 | 100.0% | 98.3% |
| 3uyiA01 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.64 | 57.0 | 5.53e-01 | 100.0% | 85.1% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 59.0 | 5.64e-01 | 100.0% | 98.7% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 58.0 | 5.31e-01 | 98.1% | 87.6% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 59.0 | 5.09e-01 | 100.0% | 83.5% |
| 1e6pB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 59.0 | 5.39e-01 | 100.0% | 93.5% |
| 3s6dA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 53.0 | 5.40e-01 | 94.1% | 88.5% |
| 3cz8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 54.0 | 5.62e-01 | 93.3% | 98.4% |
| 5az0A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.63 | 57.0 | 5.33e-01 | 100.0% | 79.6% |
| 5dqpB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.63 | 59.0 | 5.07e-01 | 100.0% | 93.7% |
| 4us5C00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.62 | 58.0 | 5.44e-01 | 100.0% | 97.9% |
| 4rshA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 38.0 | 4.56e-01 | 90.0% | 90.3% |
| 1qwkA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.62 | 57.0 | 5.41e-01 | 100.0% | 84.3% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 55.0 | 4.37e-01 | 100.0% | 48.6% |
| 2xn1A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 57.0 | 5.38e-01 | 100.0% | 90.7% |
| 2dxqA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 28.0 | 3.63e-01 | 85.2% | 74.8% |
| 3oqbA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 28.0 | 3.86e-01 | 85.6% | 85.6% |
| 4gqaD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 29.0 | 3.96e-01 | 77.8% | 89.6% |
| 2ftyA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 53.0 | 4.61e-01 | 94.4% | 99.8% |
| 2jjmA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 34.0 | 4.08e-01 | 87.4% | 82.8% |
| 3dmyA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.58 | 31.0 | 3.92e-01 | 86.3% | 83.4% |
| 3f4lA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 25.0 | 3.66e-01 | 84.4% | 89.3% |
| 3erpA01 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.57 | 53.0 | 5.15e-01 | 99.3% | 94.6% |
| 1udxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 32.0 | 3.86e-01 | 90.7% | 82.8% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 37.0 | 4.41e-01 | 90.7% | 96.7% |
| 4epkB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 52.0 | 4.90e-01 | 100.0% | 93.0% |
| 2vhlA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 50.0 | 4.83e-01 | 95.2% | 93.4% |
| 4s1pA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 35.0 | 4.14e-01 | 90.0% | 91.3% |
| 4kw2A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.54 | 45.0 | 4.80e-01 | 99.6% | 99.6% |
| 3eccA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 32.0 | 3.94e-01 | 89.6% | 93.2% |
| 5ijgA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 37.0 | 4.09e-01 | 99.3% | 85.9% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 32.0 | 4.03e-01 | 98.9% | 98.1% |
| 6yb3A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 4.27e-01 | 91.5% | 87.3% |
| 3co5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 28.0 | 3.73e-01 | 98.1% | 96.3% |
| 3ktdC01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 36.0 | 4.04e-01 | 93.0% | 88.3% |
| 3fmgA01 | 3.40.50.11130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoprotein VP7, domain 1 | 0.53 | 28.0 | 3.67e-01 | 84.4% | 91.9% |
| 6yhrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 35.0 | 4.09e-01 | 92.6% | 93.8% |
| 4p53A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 31.0 | 3.83e-01 | 79.3% | 91.7% |
| 1jmkC01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 32.0 | 3.87e-01 | 89.6% | 95.3% |
| 1jeyA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 34.0 | 3.78e-01 | 85.9% | 84.6% |
| 5g4iA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 39.0 | 3.97e-01 | 99.6% | 80.5% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 4.00e-01 | 91.5% | 87.8% |
| 3v1tC01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 31.0 | 3.81e-01 | 98.5% | 95.9% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2629957 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.84 | 82.0 | 7.83e-01 | 100.0% | 98.3% |
| 4489627 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.84 | 81.0 | 7.85e-01 | 100.0% | 94.9% |
| 3684953 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.84 | 81.0 | 7.02e-01 | 100.0% | 76.9% |
| 4082994 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.84 | 81.0 | 7.82e-01 | 100.0% | 94.6% |
| 3506446 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.20e-01 | 99.3% | 87.4% |
| 4579621 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.83e-01 | 100.0% | 97.9% |
| 4997671 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.80e-01 | 100.0% | 97.6% |
| 4028126 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.59e-01 | 100.0% | 90.6% |
| 4634847 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.87e-01 | 100.0% | 97.5% |
| 4521590 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.79e-01 | 100.0% | 96.2% |
| 3782510 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.27e-01 | 100.0% | 82.4% |
| 4616066 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.83 | 80.0 | 7.85e-01 | 100.0% | 97.2% |
| 4962786 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 80.0 | 7.77e-01 | 100.0% | 99.3% |
| 4654736 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 79.0 | 7.72e-01 | 100.0% | 97.2% |
| 4397720 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 79.0 | 7.85e-01 | 100.0% | 98.9% |
| 4036590 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 79.0 | 7.84e-01 | 100.0% | 98.6% |
| 4320102 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 79.0 | 7.60e-01 | 100.0% | 95.0% |
| 140513 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 79.0 | 7.74e-01 | 100.0% | 98.6% |
| 3255520 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 79.0 | 7.71e-01 | 100.0% | 94.8% |
| 4933857 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.82 | 78.0 | 7.78e-01 | 100.0% | 99.6% |
| 4662969 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.81 | 78.0 | 7.82e-01 | 100.0% | 99.3% |
| 4958516 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.81 | 73.0 | 7.58e-01 | 100.0% | 98.8% |
| 4031316 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.81 | 78.0 | 7.60e-01 | 100.0% | 97.2% |
| 3589247 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.81 | 78.0 | 7.47e-01 | 100.0% | 94.0% |
| 4998293 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.79 | 76.0 | 7.28e-01 | 100.0% | 96.7% |
| 4988791 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.79 | 71.0 | 7.33e-01 | 100.0% | 98.1% |
| 142770 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.78 | 75.0 | 7.26e-01 | 100.0% | 98.6% |
| 5073734 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.78 | 73.0 | 7.42e-01 | 100.0% | 98.9% |
| 4970319 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.77 | 74.0 | 7.41e-01 | 100.0% | 99.3% |
| 5037417 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.77 | 73.0 | 6.96e-01 | 99.6% | 95.5% |
| 3602370 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.75 | 72.0 | 7.22e-01 | 100.0% | 98.9% |
| 5000251 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.75 | 70.0 | 7.13e-01 | 100.0% | 100.0% |
| 4573847 | 2002.1.1.118 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UvdE | 0.71 | 68.0 | 5.95e-01 | 99.6% | 77.3% |
| 3361094 | 284.2.1.1 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 | 0.70 | 65.0 | 5.90e-01 | 100.0% | 94.7% |
| 4020619 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.70 | 65.0 | 5.63e-01 | 100.0% | 88.3% |
| 1918488 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.69 | 66.0 | 6.30e-01 | 100.0% | 96.4% |
| 3785858 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.69 | 64.0 | 5.79e-01 | 100.0% | 95.6% |
| 5064016 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.68 | 48.0 | 5.46e-01 | 93.3% | 94.5% |
| 3235034 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.68 | 64.0 | 5.69e-01 | 100.0% | 88.5% |
| 3934317 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.67 | 63.0 | 6.03e-01 | 100.0% | 94.8% |
| 3517974 | 2002.1.1.118 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UvdE | 0.67 | 54.0 | 5.64e-01 | 83.7% | 98.8% |
| 3831850 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.66 | 60.0 | 4.81e-01 | 100.0% | 52.2% |
| 3929123 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.66 | 59.0 | 5.45e-01 | 95.6% | 87.0% |
| None | — | 0.65 | 61.0 | 5.07e-01 | 100.0% | 60.2% | |
| 3242067 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.65 | 60.0 | 5.16e-01 | 100.0% | 73.2% |
| 3625413 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.65 | 60.0 | 5.08e-01 | 99.6% | 73.6% |
| 3954334 | 2002.1.1.53 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N | 0.64 | 40.0 | 4.93e-01 | 85.2% | 100.0% |
| 4928712 | 2002.1.1.54 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh | 0.63 | 58.0 | 5.17e-01 | 98.1% | 88.7% |
| 3785969 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.63 | 59.0 | 5.44e-01 | 100.0% | 89.0% |
| 5047021 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.62 | 59.0 | 5.51e-01 | 100.0% | 87.4% |
| 3685848 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.62 | 57.0 | 5.23e-01 | 100.0% | 80.6% |
| 4128925 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.61 | 50.0 | 5.24e-01 | 99.3% | 93.9% |
| 3959021 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 57.0 | 5.40e-01 | 100.0% | 98.1% |
| 5008122 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 35.0 | 4.23e-01 | 91.5% | 89.4% |
| 3632222 | 7570.1.1.4 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27239 | 0.56 | 36.0 | 4.29e-01 | 87.0% | 95.0% |
| 3163602 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 50.0 | 5.13e-01 | 95.9% | 99.6% |
| 4947380 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.54 | 42.0 | 4.38e-01 | 89.6% | 87.8% |
| 3928086 | 2006.1.6.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N | 0.53 | 35.0 | 3.88e-01 | 85.9% | 83.3% |
| 3696862 | 7577.1.1.7 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Cys_Met_Meta_PP | 0.52 | 38.0 | 3.60e-01 | 98.1% | 61.6% |
| 3244232 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 32.0 | 3.60e-01 | 86.3% | 75.7% |
| 3918045 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.52 | 35.0 | 2.61e-01 | 77.4% | 25.3% |
| 4930574 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.51 | 38.0 | 4.08e-01 | 99.6% | 88.3% |
| 1199965 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.51 | 32.0 | 3.88e-01 | 99.6% | 96.0% |
| 3214964 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.50 | 43.0 | 4.06e-01 | 90.7% | 92.7% |
D2
high
residues 291-392
D3
high
residues 394-443
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cb1A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.87 | 68.0 | 6.30e-01 | 100.0% | 66.7% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.84 | 72.0 | 6.96e-01 | 94.0% | 85.7% |
| 4i2aA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.82 | 70.0 | 6.66e-01 | 100.0% | 79.7% |
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.81 | 69.0 | 6.27e-01 | 96.0% | 80.9% |
| 1cukA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.72 | 62.0 | 5.46e-01 | 100.0% | 69.7% |
| 3vdpA01 | 1.10.8.420 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 | 0.72 | 49.0 | 4.90e-01 | 72.0% | 78.8% |
| 1bvsA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.69 | 60.0 | 5.45e-01 | 100.0% | 75.7% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 52.0 | 4.81e-01 | 84.0% | 81.8% |
| 4y7dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.69 | 49.0 | 3.06e-01 | 78.0% | 41.9% |
| 1a5tA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 50.0 | 5.34e-01 | 98.0% | 100.0% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 52.0 | 5.00e-01 | 98.0% | 73.3% |
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 50.0 | 3.60e-01 | 92.0% | 44.9% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 46.0 | 4.20e-01 | 94.0% | 84.3% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.56 | 47.0 | 3.75e-01 | 98.0% | 97.2% |
| 2iusA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 2.43e-01 | 76.0% | 29.9% |
| 1bw6A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 33.0 | 3.19e-01 | 74.0% | 58.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726427 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.92 | 68.0 | 7.51e-01 | 84.0% | 97.5% |
| 2772131 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.89 | 71.0 | 6.72e-01 | 100.0% | 72.9% |
| 197595 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.86 | 73.0 | 6.91e-01 | 94.0% | 83.1% |
| 2568242 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.85 | 72.0 | 6.75e-01 | 100.0% | 75.4% |
| 4640353 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.85 | 74.0 | 6.96e-01 | 96.0% | 83.3% |
| 4965166 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.84 | 71.0 | 6.64e-01 | 92.0% | 83.3% |
| 5000421 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.84 | 75.0 | 6.71e-01 | 100.0% | 78.6% |
| 5065201 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.84 | 76.0 | 6.91e-01 | 100.0% | 78.5% |
| 4004001 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.84 | 66.0 | 6.96e-01 | 92.0% | 95.6% |
| 4952232 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.84 | 72.0 | 6.58e-01 | 96.0% | 78.5% |
| 4980814 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.83 | 61.0 | 6.78e-01 | 78.0% | 100.0% |
| 4968454 | 102.1.1.160 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Cdd1 | 0.83 | 74.0 | 6.42e-01 | 100.0% | 98.7% |
| 2970 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.83 | 71.0 | 6.64e-01 | 100.0% | 78.3% |
| 4999217 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.82 | 73.0 | 6.38e-01 | 100.0% | 73.3% |
| 5039719 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.81 | 72.0 | 6.79e-01 | 100.0% | 85.0% |
| 5076923 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.80 | 68.0 | 6.12e-01 | 96.0% | 72.9% |
| 4970811 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.79 | 69.0 | 6.01e-01 | 100.0% | 65.3% |
| 3573558 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.79 | 65.0 | 5.79e-01 | 96.0% | 85.3% |
| 3246956 | 102.5.1.2 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF4332 | 0.78 | 68.0 | 5.91e-01 | 98.0% | 72.0% |
| 4997985 | 102.1.1.52 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › AF1548-like_C | 0.77 | 54.0 | 5.90e-01 | 74.0% | 92.5% |
| None | — | 0.73 | 63.0 | 5.43e-01 | 100.0% | 66.3% | |
| 5081275 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 61.0 | 5.69e-01 | 100.0% | 84.6% |
| 3391223 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 62.0 | 5.09e-01 | 100.0% | 62.1% |
| 4599951 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 63.0 | 5.67e-01 | 100.0% | 75.7% |
| 3282256 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.71 | 63.0 | 5.27e-01 | 100.0% | 62.4% |
| 4523215 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.71 | 63.0 | 5.38e-01 | 100.0% | 66.3% |
| None | — | 0.70 | 62.0 | 5.30e-01 | 100.0% | 67.5% | |
| 4037683 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.70 | 59.0 | 5.55e-01 | 100.0% | 81.5% |
| None | — | 0.70 | 62.0 | 5.29e-01 | 100.0% | 66.3% | |
| None | — | 0.70 | 59.0 | 5.41e-01 | 100.0% | 77.1% | |
| 4664974 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.70 | 61.0 | 5.48e-01 | 100.0% | 75.7% |
| None | — | 0.69 | 60.0 | 5.43e-01 | 100.0% | 77.1% | |
| 4604226 | 103.1.1.135 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA, EF-Ts_N | 0.69 | 54.0 | 5.33e-01 | 98.0% | 80.0% |
| 5004994 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 55.0 | 5.25e-01 | 94.0% | 76.7% |
| 3670718 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.67 | 54.0 | 5.40e-01 | 90.0% | 92.0% |
| 3501828 | 103.1.1.84 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 | 0.66 | 52.0 | 5.28e-01 | 90.0% | 92.0% |
| 5000823 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.62 | 54.0 | 4.00e-01 | 100.0% | 40.0% |
| 4933655 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.60 | 45.0 | 4.41e-01 | 86.0% | 83.6% |
| 5078089 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.58 | 44.0 | 3.00e-01 | 90.0% | 93.5% |
| 3532033 | 7061.1.1.4 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › RGM_C | 0.55 | 44.0 | 4.15e-01 | 100.0% | 73.8% |
D4
high
residues 457-550
Domain cluster:
rep: LC554890.1__BCG50042.1__X__00024__D127-241
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14792.13 best | DNA_pol_B_palm | 25.5 | 1.80e-05 | 85.1% | 31.9% |
D5
high
residues 558-610
Domain cluster:
rep: SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00440__D267-324
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14791.12 best | DNA_pol_B_thumb | 52.1 | 6.90e-14 | 100.0% | 82.5% |