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DNA_polymerase-like_protein
Euk-VirBufonid_herpesvirus_1
DNA_polymerase-like_protein__YP_009552918__Bufonid_herpesvirus_1__2282206
Identity
- Accession:
- YP_009552918 ↗
- Protein ID:
- DNA_polymerase-like_protein
- Kingdom:
- euk
Quality
71.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Alloherpesviridae›
Batravirus›
Bufonid_herpesvirus_1
TaxID: 2282206
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 207-229_249-380_434-522
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q8iA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.81 | 60.0 | 6.98e-01 | 100.0% | 99.5% |
| 2gv9A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.80 | 70.0 | 7.37e-01 | 100.0% | 99.1% |
| 1s5jA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.79 | 61.0 | 6.86e-01 | 98.8% | 99.5% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.77 | 67.0 | 6.43e-01 | 100.0% | 80.1% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.77 | 65.0 | 6.97e-01 | 100.0% | 98.6% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.75 | 68.0 | 6.99e-01 | 100.0% | 98.3% |
| 1chmA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.68 | 34.0 | 4.22e-01 | 76.6% | 74.8% |
| 2k0zA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 23.0 | 3.32e-01 | 93.4% | 82.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017082 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 64.0 | 5.49e-01 | 100.0% | 52.4% |
| 4649118 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.83 | 67.0 | 5.56e-01 | 100.0% | 51.4% |
| 5080048 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.82 | 56.0 | 6.66e-01 | 100.0% | 96.6% |
| 4948574 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.80 | 65.0 | 5.34e-01 | 100.0% | 50.5% |
| 4934764 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.80 | 64.0 | 5.47e-01 | 100.0% | 54.8% |
| 5076614 | 2484.1.1.328 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B | 0.80 | 65.0 | 4.64e-01 | 100.0% | 32.4% |
| 4972218 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 65.0 | 4.94e-01 | 100.0% | 40.8% |
| 4879892 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.79 | 58.0 | 6.16e-01 | 84.0% | 83.4% |
| 3256261 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.79 | 67.0 | 6.61e-01 | 100.0% | 83.1% |
| 5051934 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.79 | 67.0 | 7.00e-01 | 100.0% | 94.2% |
| 4218318 | 2484.1.1.295 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, RNase_H_2 | 0.79 | 64.0 | 5.73e-01 | 100.0% | 63.1% |
| 5027090 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.78 | 63.0 | 6.30e-01 | 100.0% | 81.2% |
| 4983222 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.78 | 63.0 | 5.44e-01 | 100.0% | 56.4% |
| 3606428 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.78 | 66.0 | 6.79e-01 | 100.0% | 91.1% |
| 3404726 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.77 | 69.0 | 6.40e-01 | 100.0% | 76.3% |
| 3784398 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.76 | 68.0 | 6.73e-01 | 100.0% | 89.0% |
| 4929239 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.75 | 64.0 | 5.73e-01 | 100.0% | 66.2% |
| 3167764 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 68.0 | 6.24e-01 | 100.0% | 76.1% |
| 4888481 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.74 | 57.0 | 5.50e-01 | 82.8% | 71.4% |
| 5000651 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 65.0 | 5.39e-01 | 100.0% | 58.7% |
| 3492151 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.71 | 68.0 | 6.01e-01 | 100.0% | 77.3% |
| 3465162 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.70 | 54.0 | 5.34e-01 | 100.0% | 73.8% |
| 5067624 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.68 | 33.0 | 4.55e-01 | 75.8% | 88.5% |
| 4978326 | 2484.3.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain | 0.67 | 35.0 | 4.49e-01 | 76.2% | 84.1% |
| 5025000 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.67 | 33.0 | 4.63e-01 | 76.6% | 93.6% |
| 5034397 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.66 | 33.0 | 4.48e-01 | 77.0% | 88.1% |
| 3413602 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.59 | 33.0 | 4.04e-01 | 84.0% | 83.9% |
| 3783354 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.55 | 36.0 | 4.07e-01 | 84.0% | 83.7% |
| 3182759 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 24.0 | 2.68e-01 | 100.0% | 51.3% |
| 5041077 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 24.0 | 2.67e-01 | 99.2% | 50.5% |
| 3712159 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 26.0 | 3.15e-01 | 88.5% | 69.7% |
| 3007051 | 3003.1.1.1 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N | 0.50 | 22.0 | 2.83e-01 | 97.1% | 67.4% |
D2
high
residues 1268-1335
D3
high
residues 1371-1437
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ug9A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 49.0 | 3.47e-01 | 88.1% | 44.9% |
| 2o0yB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 35.0 | 3.57e-01 | 86.6% | 66.2% |
| 3rk6A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 38.0 | 2.69e-01 | 77.6% | 22.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5049987 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 3.78e-01 | 91.0% | 52.4% |
| 4937874 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.57 | 37.0 | 3.74e-01 | 89.6% | 67.7% |
| 4975458 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 36.0 | 3.80e-01 | 86.6% | 74.1% |
| 3244381 | 109.4.1.2924 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_N, RICTOR_V | 0.56 | 40.0 | 2.26e-01 | 77.6% | 29.0% |
| 4929381 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.63e-01 | 89.6% | 64.0% |
| 3935109 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 46.0 | 3.03e-01 | 94.0% | 23.9% |
| 3965146 | 101.1.2.162 ↗ | alpha arrays › HTH › HTH › winged helix domain › DprA_WH | 0.54 | 35.0 | 3.54e-01 | 91.0% | 67.7% |
| 5039184 | 321.1.1.6 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase | 0.53 | 44.0 | 2.83e-01 | 97.0% | 24.2% |
| 3228605 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.53 | 45.0 | 3.32e-01 | 95.5% | 63.8% |
| 5015219 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 35.0 | 3.14e-01 | 88.1% | 47.4% |
| 3965527 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.32e-01 | 88.1% | 55.3% |
| 3759099 | 7558.1.1.10 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C | 0.53 | 47.0 | 3.05e-01 | 100.0% | 76.1% |
| 3372110 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.53 | 38.0 | 3.82e-01 | 88.1% | 74.3% |
| 4944400 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 34.0 | 3.42e-01 | 94.0% | 62.9% |
| 3643333 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.53 | 39.0 | 3.55e-01 | 89.6% | 58.9% |
| 4026195 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.79e-01 | 85.1% | 72.0% |
| 3554191 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.52 | 43.0 | 2.79e-01 | 92.5% | 22.5% |
| 4943126 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 3.04e-01 | 98.5% | 43.6% |
| 3705119 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.51 | 42.0 | 3.11e-01 | 97.0% | 86.8% |
| 3362715 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 39.0 | 3.60e-01 | 86.6% | 64.7% |
| 3999344 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.51 | 27.0 | 3.27e-01 | 92.5% | 82.5% |
| 4928591 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 3.41e-01 | 89.6% | 69.2% |
| 4276676 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.50 | 34.0 | 3.31e-01 | 88.1% | 62.7% |
| 3594892 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 3.33e-01 | 100.0% | 60.6% |
| 3277286 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.50 | 40.0 | 4.00e-01 | 94.0% | 95.7% |
D4
medium
residues 16-73_158-197
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 46.0 | 4.27e-01 | 73.5% | 56.9% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 49.0 | 5.36e-01 | 78.6% | 100.0% |
| 1xweA01 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 51.0 | 4.55e-01 | 82.7% | 76.9% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 48.0 | 4.72e-01 | 77.6% | 93.2% |
| 5jpnC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 48.0 | 4.12e-01 | 78.6% | 65.6% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 47.0 | 4.33e-01 | 77.6% | 84.4% |
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 43.0 | 4.18e-01 | 76.5% | 88.6% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.59 | 43.0 | 4.62e-01 | 77.6% | 94.1% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 41.0 | 4.54e-01 | 73.5% | 100.0% |
| 2qcpX01 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.56 | 40.0 | 4.47e-01 | 75.5% | 98.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 33.0 | 3.87e-01 | 89.8% | 88.9% |
| 6lbtA01 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 41.0 | 3.64e-01 | 77.6% | 85.9% |
| 3mcaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 38.0 | 3.61e-01 | 71.4% | 76.3% |
| 6x6uA01 | 3.60.9.10 | Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain | 0.55 | 44.0 | 3.46e-01 | 86.7% | 85.3% |
| 1c8zA00 | 3.20.90.10 | Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A | 0.52 | 36.0 | 2.68e-01 | 71.4% | 89.8% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 36.0 | 2.62e-01 | 74.5% | 29.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3399810 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.71 | 50.0 | 5.24e-01 | 73.5% | 90.0% |
| 3303656 | 2.1.1.157 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 | 0.70 | 60.0 | 5.39e-01 | 92.9% | 93.3% |
| 3230021 | 2.1.1.126 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 | 0.69 | 50.0 | 5.50e-01 | 82.7% | 93.8% |
| 3797107 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 49.0 | 5.01e-01 | 74.5% | 85.3% |
| 4964458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 46.0 | 4.56e-01 | 70.4% | 82.9% |
| 3164941 | 129.1.1.99 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF4131 | 0.67 | 47.0 | 4.67e-01 | 71.4% | 92.0% |
| 3830803 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 47.0 | 4.60e-01 | 71.4% | 91.4% |
| 3992385 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 47.0 | 5.15e-01 | 73.5% | 91.3% |
| 5000515 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 38.0 | 3.90e-01 | 70.4% | 60.0% |
| 3197234 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.64 | 50.0 | 4.89e-01 | 84.7% | 92.7% |
| 3227979 | 2.1.1.126 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 | 0.64 | 50.0 | 5.17e-01 | 82.7% | 93.3% |
| 4446654 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 42.0 | 4.90e-01 | 76.5% | 95.7% |
| 3705431 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 45.0 | 4.33e-01 | 75.5% | 97.4% |
| 3100772 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.62 | 37.0 | 3.92e-01 | 70.4% | 66.3% |
| 4606349 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 46.0 | 4.74e-01 | 80.6% | 86.3% |
| 3165931 | 2.7.1.3 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_Mu_Gp45 | 0.60 | 42.0 | 4.51e-01 | 79.6% | 85.9% |
| 4167472 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 48.0 | 3.36e-01 | 86.7% | 96.2% |
| 4955341 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 43.0 | 4.21e-01 | 78.6% | 77.1% |
| 167481 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.57 | 44.0 | 4.16e-01 | 83.7% | 83.1% |
| 3178336 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.56 | 44.0 | 3.97e-01 | 83.7% | 93.3% |
| 5077487 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.56 | 42.0 | 3.78e-01 | 80.6% | 97.9% |
| 3559516 | 391.1.1.28 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › CHRDL_1_2_C | 0.56 | 38.0 | 3.85e-01 | 71.4% | 99.0% |
| 4961746 | 304.8.1.122 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N | 0.55 | 37.0 | 3.52e-01 | 75.5% | 58.3% |
| 4682301 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.53 | 46.0 | 3.16e-01 | 98.0% | 98.1% |
| 4137580 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.52 | 37.0 | 3.45e-01 | 74.5% | 83.2% |
| 3719326 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 40.0 | 2.78e-01 | 88.8% | 40.3% |
D5
medium
residues 75-153
D6
medium
residues 523-599_675-737
D7
medium
residues 629-674_842-876
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.63e-01 | 100.0% | 66.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2833626 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.58 | 36.0 | 2.40e-01 | 100.0% | 15.8% |
| 3370449 | 390.1.1.8 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_4 | 0.51 | 35.0 | 3.53e-01 | 72.8% | 83.5% |
| 4127509 | 3292.1.1.1 ↗ | a+b complex topology › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine_deam_C | 0.50 | 39.0 | 2.99e-01 | 86.4% | 77.1% |
D8
medium
residues 1139-1249