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DNA_polymerase

Euk-Vir

Fowl_aviadenovirus_C

DNA_polymerase__YP_004346921__Fowl_aviadenovirus_C__190063

Identity

Accession:: YP_004346921 ↗
Protein ID:: DNA_polymerase
Kingdom:: euk

Quality

80.3 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Fowl_aviadenovirus_C

TaxID: 190063

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-24_49-164

PDB

Domain cluster: rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D69-178

D2 medium residues 215-458

PDB

Domain cluster: rep: DNA_polymerase__YP_004191813__Fowl_aviadenovirus_E__190065__D141-375

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	40.0	3.30e-10	30.7%	16.2%

D3 medium residues 459-562

PDB

Domain cluster: rep: DNA_polyermase__YP_009112716__Psittacine_adenovirus_3__1580497__D391-479

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	81.1	1.10e-22	100.0%	20.1%

D4 medium residues 563-591_610-633_655-692_771-808

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	31.2	1.60e-07	42.6%	9.0%
PF03175.19	DNA_pol_B_2	43.1	3.90e-11	30.2%	8.3%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1li5A02	1.20.120.640	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0.66	31.0	3.70e-01	98.4%	64.4%
4x5mA00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.64	30.0	3.68e-01	100.0%	68.6%
4rngC00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.64	30.0	3.75e-01	100.0%	71.1%
5bylA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.62	32.0	2.71e-01	91.5%	31.8%
1yvwA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.61	30.0	3.54e-01	98.4%	67.4%
1nlxA00	1.20.120.320	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen	0.59	28.0	3.13e-01	93.0%	52.9%
4tq1A03	1.10.246.190	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain	0.53	24.0	3.61e-01	71.3%	98.3%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3394485	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.67	33.0	4.11e-01	99.2%	74.1%
5072726	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.64	30.0	3.77e-01	95.3%	73.3%
1411677	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.64	30.0	3.75e-01	100.0%	71.1%
3938825	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.63	31.0	3.86e-01	99.2%	72.9%
5013782	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.63	29.0	3.83e-01	100.0%	77.3%
5029393	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.63	31.0	3.73e-01	100.0%	69.7%
3491658	5000.3.1.1 ↗	alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2	0.60	29.0	2.70e-01	97.7%	33.9%
3602005	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.58	35.0	4.36e-01	98.4%	96.2%

D5 medium residues 634-654_980-1059

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ungC03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.64	45.0	4.14e-01	81.2%	56.4%
3dgpB00	3.30.70.1220	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like	0.63	39.0	4.60e-01	92.1%	98.4%
1x9mA03	3.30.70.370	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	53.0	4.38e-01	96.0%	83.1%
1ydlA00	3.30.70.1220	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like	0.60	33.0	3.84e-01	72.3%	74.6%
2uvaG03	3.30.70.3320	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.60	44.0	4.32e-01	87.1%	72.2%
3i4hX01	3.30.70.1890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	44.0	4.13e-01	84.2%	89.8%
1lxjA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	38.0	3.86e-01	80.2%	69.9%
1gmnA01	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.54	31.0	3.28e-01	70.3%	62.5%
6nqbF00	3.30.70.60	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B	0.54	35.0	3.86e-01	81.2%	84.4%
2khdA00	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	42.0	4.17e-01	92.1%	79.6%
5ja2A01	3.30.559.30	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain	0.54	43.0	3.30e-01	90.1%	80.1%
2jzxA02	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.52	38.0	4.13e-01	91.1%	97.5%
2k3iA01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	38.0	4.07e-01	79.2%	92.9%
1ufwA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.52	37.0	3.86e-01	76.2%	82.1%
5k9fA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	39.0	3.89e-01	82.2%	83.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4956224	304.48.1.3 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B	0.72	59.0	4.38e-01	86.1%	78.3%
3690781	304.48.1.11 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol	0.60	46.0	4.74e-01	89.1%	86.3%
4026401	878.1.1.7 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Pro_sub2	0.58	45.0	4.53e-01	83.2%	81.9%
5075512	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.58	45.0	3.72e-01	85.1%	69.3%
4030214	304.48.1.6 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A	0.58	47.0	4.10e-01	89.1%	92.3%
3170679	304.9.1.10 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Calcipressin	0.57	42.0	4.15e-01	79.2%	71.8%
3595281	3715.1.1.0 ↗	a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e	0.56	43.0	4.09e-01	81.2%	86.7%
3601834	304.48.1.6 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A	0.56	46.0	4.49e-01	90.1%	81.8%
4311880	304.11.1.4 ↗	a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › FAS_AT_central	0.53	43.0	4.34e-01	90.1%	91.4%
3185440	304.48.1.10 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS	0.52	42.0	3.26e-01	87.1%	89.6%
3707104	878.1.1.3 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › FAZ1_cons	0.52	43.0	4.33e-01	90.1%	95.0%
4990817	301.2.1.1 ↗	a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS	0.51	35.0	3.21e-01	72.3%	93.6%
3740867	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.51	38.0	4.06e-01	82.2%	96.5%
3256533	2004.1.1.17 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head	0.51	37.0	2.27e-01	79.2%	74.5%

D6 medium residues 693-770

PDB

Domain cluster: rep: DNA_polymerase__NP_040516__Human_mastadenovirus_C__129951__D703-805

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	66.7	2.70e-18	100.0%	15.2%

D7 medium residues 809-862_955-979

PDB

Domain cluster: rep: DNA_polymerase__YP_009246419__Bat_mastadenovirus_WIV11__1788433__D804-841_908-928

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	26.1	5.40e-06	98.7%	11.3%

D8 medium residues 1060-1206

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4076295	375.1.1.88 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta	0.62	25.0	4.03e-01	94.6%	100.0%