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DNA_polymerase
Euk-VirFowl_aviadenovirus_5
DNA_polymerase__YP_007985646__Fowl_aviadenovirus_5__172861
Identity
- Accession:
- YP_007985646 ↗
- Protein ID:
- DNA_polymerase
- Kingdom:
- euk
Quality
78.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Fowl_aviadenovirus_5
TaxID: 172861
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-155
Domain cluster:
rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D69-178
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7pl7A01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 49.0 | 4.79e-01 | 80.4% | 97.4% |
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.63 | 49.0 | 4.82e-01 | 81.9% | 96.7% |
| 2qmaA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 30.0 | 3.19e-01 | 88.4% | 49.6% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 47.0 | 4.59e-01 | 80.4% | 96.7% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 44.0 | 4.24e-01 | 76.1% | 85.5% |
| 5jzeA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 44.0 | 4.27e-01 | 76.8% | 86.2% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 46.0 | 4.61e-01 | 81.2% | 96.5% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 41.0 | 3.95e-01 | 73.2% | 100.0% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 43.0 | 4.01e-01 | 76.8% | 88.8% |
| 4k3bA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 25.0 | 3.29e-01 | 84.8% | 89.9% |
| 5lw5A00 | 3.90.70.100 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Tymovirus endopeptidases | 0.50 | 41.0 | 4.09e-01 | 96.4% | 84.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3212277 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 51.0 | 4.69e-01 | 82.6% | 84.4% |
| 3931010 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 50.0 | 4.03e-01 | 83.3% | 98.9% |
| 3432843 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.64 | 46.0 | 4.40e-01 | 73.9% | 99.4% |
| 3864069 | 219.1.1.56 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C101 | 0.63 | 52.0 | 4.14e-01 | 87.0% | 98.9% |
| 3869291 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.62 | 49.0 | 4.52e-01 | 83.3% | 80.6% |
| 3909949 | 219.1.1.56 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C101 | 0.61 | 51.0 | 4.07e-01 | 90.6% | 97.6% |
| 3855063 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.61 | 48.0 | 4.28e-01 | 81.9% | 76.2% |
| 3493239 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.61 | 49.0 | 4.68e-01 | 84.8% | 94.3% |
| 3245933 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 45.0 | 4.61e-01 | 78.3% | 100.0% |
| 3897776 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 47.0 | 3.89e-01 | 81.9% | 58.7% |
| 1891831 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 44.0 | 4.27e-01 | 76.8% | 86.2% |
| 3356938 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 47.0 | 4.57e-01 | 82.6% | 91.0% |
| 1228557 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 46.0 | 4.30e-01 | 80.4% | 82.8% |
| 3763030 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 52.0 | 4.54e-01 | 94.2% | 84.4% |
| 3993036 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.60 | 46.0 | 4.64e-01 | 80.4% | 98.5% |
| 2429118 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.59 | 44.0 | 4.15e-01 | 76.8% | 82.9% |
| 411781 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.59 | 44.0 | 3.98e-01 | 76.8% | 72.0% |
| 3935022 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.59 | 45.0 | 4.38e-01 | 81.2% | 87.1% |
| 2429116 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.59 | 43.0 | 4.18e-01 | 76.1% | 85.9% |
| 3815944 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.58 | 46.0 | 4.05e-01 | 82.6% | 70.5% |
| 3203651 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 45.0 | 4.11e-01 | 83.3% | 89.7% |
| 3237277 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 45.0 | 4.42e-01 | 85.5% | 92.7% |
| 3804954 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 39.0 | 4.39e-01 | 87.0% | 100.0% |
| 3580013 | 219.1.1.143 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, OTU | 0.53 | 44.0 | 2.99e-01 | 87.7% | 64.0% |
| 3958356 | 323.1.1.9 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C | 0.52 | 36.0 | 3.00e-01 | 71.0% | 84.1% |
| 3704064 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.50 | 45.0 | 3.93e-01 | 98.6% | 88.1% |
D2
medium
residues 202-444
Domain cluster:
rep: DNA_polymerase__YP_004191813__Fowl_aviadenovirus_E__190065__D141-375
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03175.19 best | DNA_pol_B_2 | 34.5 | 1.60e-08 | 28.8% | 15.6% |
D3
medium
residues 445-555
Domain cluster:
rep: DNA_polyermase__YP_009112716__Psittacine_adenovirus_3__1580497__D391-479
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03175.19 best | DNA_pol_B_2 | 98.0 | 8.90e-28 | 100.0% | 22.2% |
D4
medium
residues 637-662_1010-1140_1208-1238
Domain cluster:
rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289