DNA_polymerase

Euk-Vir

Turkey_aviadenovirus_4

DNA_polymerase__YP_008719820__Turkey_aviadenovirus_4__1408257

Identity

79.3 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› turkey_adenovirus_4

TaxID: 1408257

View cluster (24 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-157

PDB

Domain cluster: rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D69-178

D2 medium residues 210-293

PDB

Domain cluster: rep: MZ727332.1__UCW44374.1__X__00007__D7-96

D3 medium residues 294-433

PDB

Domain cluster: rep: DNA_polymerase__YP_002213831__Human_mastadenovirus_B__108098__D339-408_426-491

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5aj3E01	3.30.230.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.53	21.0	2.70e-01	98.6%	59.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4975451	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.56	32.0	2.64e-01	70.7%	31.2%
5049077	2004.1.1.16 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf	0.53	30.0	2.59e-01	70.7%	34.1%
4961960	223.1.1.14 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4	0.51	24.0	2.66e-01	78.6%	50.0%
3995145	316.1.1.10 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap	0.50	34.0	2.77e-01	70.0%	82.9%

D4 medium residues 434-581

PDB

Domain cluster: rep: DNA_polymerase__YP_008719852__Turkey_aviadenovirus_5__1408258__D440-575

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	132.9	2.20e-38	99.3%	28.4%

D5 medium residues 640-656_1025-1101

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fxdA05	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.60	56.0	5.15e-01	100.0%	82.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3317444	304.48.1.3 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B	0.64	58.0	3.68e-01	100.0%	87.0%
3877126	304.48.1.24 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744	0.63	58.0	3.44e-01	100.0%	52.7%
3471267	304.48.1.3 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B	0.63	58.0	3.59e-01	100.0%	86.1%
3474147	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.63	58.0	3.69e-01	100.0%	84.8%
4401347	375.1.1.128 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT	0.54	31.0	3.79e-01	78.7%	96.4%
3759121	376.1.1.97 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598	0.51	28.0	3.57e-01	80.9%	100.0%

D6 medium residues 1102-1213

PDB

Domain cluster: rep: DNA_polymerase__YP_004346921__Fowl_aviadenovirus_C__190063__D1060-1206