DNA_polymerase

Euk-Vir

Pigeon_adenovirus_1

DNA_polymerase__YP_009047094__Pigeon_adenovirus_1__764030

Identity

78.5 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Pigeon_adenovirus_1

TaxID: 764030

View cluster (24 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 58-95_125-144

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xhsA00	3.10.490.10	Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like	0.58	47.0	3.83e-01	93.1%	58.4%
2qsrA01	3.90.1150.50	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain	0.54	37.0	2.69e-01	82.8%	26.5%
2q7eA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.53	36.0	2.53e-01	70.7%	52.8%
2mp4A00	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.52	40.0	2.95e-01	84.5%	80.6%
2x7gA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.52	37.0	3.32e-01	77.6%	84.1%
4uwmA00	3.20.20.30	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain	0.50	40.0	2.56e-01	93.1%	43.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1223478	225.1.1.3 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c	0.52	37.0	2.50e-01	77.6%	64.6%
3428521	109.4.1.1560 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, E_motif	0.51	38.0	2.26e-01	82.8%	55.6%
4091341	3121.1.1.0 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain	0.50	43.0	3.95e-01	100.0%	89.9%

D2 medium residues 225-332

PDB

Domain cluster: rep: MZ727332.1__UCW44374.1__X__00007__D7-96

D3 medium residues 333-470

PDB

Domain cluster: rep: DNA_polymerase__YP_009310429__Pigeon_adenovirus_2__1907767__D332-435

D4 medium residues 471-607

PDB

Domain cluster: rep: DNA_polymerase__YP_008719852__Turkey_aviadenovirus_5__1408258__D440-575

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	117.2	1.30e-33	99.3%	26.7%

D5 medium residues 629-831

PDB

Domain cluster: rep: DNA_polymerase__YP_002213831__Human_mastadenovirus_B__108098__D647-666_688-846_965-977

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	228.7	2.00e-67	100.0%	41.2%

D6 medium residues 1089-1228

PDB

Domain cluster: rep: DNA_polymerase__YP_004346921__Fowl_aviadenovirus_C__190063__D1060-1206