DNA_polymerase

Euk-Vir

Pigeon_adenovirus_2

DNA_polymerase__YP_009310429__Pigeon_adenovirus_2__1907767

Identity

71.6 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Pigeon_adenovirus_2

TaxID: 1907767

View cluster (24 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-158

PDB

D2 medium residues 193-331

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1a7jA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	41.0	3.23e-01	71.2%	51.6%
6g4bA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.55	35.0	3.33e-01	95.7%	51.5%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4144761	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.62	34.0	4.05e-01	95.0%	78.5%
3289373	3601.1.1.0 ↗	alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain	0.56	35.0	3.51e-01	95.7%	60.7%
3253771	4271.1.1.3 ↗	alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N	0.51	37.0	3.20e-01	76.3%	47.4%

D3 medium residues 332-435

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	26.0	5.90e-06	67.3%	14.5%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xeaA02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.60	42.0	3.39e-01	93.3%	39.1%
3l20A00	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.57	37.0	3.25e-01	95.2%	43.5%
2vzyC00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.56	37.0	3.09e-01	84.6%	37.0%
4hadB02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.54	36.0	2.95e-01	90.4%	36.4%
3t9yA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.54	39.0	3.57e-01	82.7%	58.2%
8a9nA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.51	37.0	3.45e-01	78.8%	60.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3788070	2011.1.1.8 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28	0.58	46.0	3.23e-01	85.6%	34.5%
3182013	216.1.1.1 ↗	a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con	0.54	35.0	3.01e-01	82.7%	39.4%
3496645	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.52	44.0	2.71e-01	91.3%	19.7%
4298571	212.1.1.2 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_gyraseB	0.50	36.0	3.03e-01	75.0%	73.0%
4486055	2011.1.1.8 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28	0.50	43.0	3.07e-01	95.2%	72.5%

D4 medium residues 587-601_617-767

PDB

Domain cluster: rep: DNA_polymerase__YP_002213831__Human_mastadenovirus_B__108098__D647-666_688-846_965-977

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	143.1	1.90e-41	100.0%	30.3%

D5 medium residues 1031-1149

PDB

Domain cluster: rep: DNA_polymerase__YP_004346921__Fowl_aviadenovirus_C__190063__D1060-1206