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DNA_polymerase
Euk-VirAnticarsia_gemmatalis_multiple_nucleopolyhedrovirus
DNA_polymerase__YP_009316112__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591
Identity
- Accession:
- YP_009316112 ↗
- Protein ID:
- DNA_polymerase
- Kingdom:
- euk
Quality
83.9
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus
TaxID: 268591
Cluster
View cluster (158 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 511-521_615-729
Domain cluster:
rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00136.27 best | DNA_pol_B | 49.2 | 5.10e-13 | 95.2% | 23.0% |
D2
medium
residues 3-69_100-181
D3
medium
residues 189-342
Domain cluster:
rep: DNA_polymerase__YP_009118564__Condylorrhiza_vestigialis_MNPV__1592576__D196-404
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03104.26 best | DNA_pol_B_exo1 | 80.9 | 1.40e-22 | 100.0% | 67.4% |
D4
medium
residues 343-420
D5
medium
residues 473-499_523-556
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gjxA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.57 | 43.0 | 3.42e-01 | 82.0% | 92.2% |
| 5w5yB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.55 | 38.0 | 2.91e-01 | 91.8% | 30.6% |
| 1vrmA02 | 1.10.3980.10 | Mainly Alpha › Orthogonal Bundle › T-fold › ApbE-like superfamily | 0.53 | 35.0 | 3.07e-01 | 70.5% | 82.2% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.27e-01 | 75.4% | 62.4% |
| 3c0fB00 | 3.30.1490.340 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.50 | 40.0 | 3.69e-01 | 91.8% | 92.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067611 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.60 | 40.0 | 2.82e-01 | 72.1% | 22.8% |
| 4987404 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.57 | 38.0 | 2.70e-01 | 72.1% | 22.6% |
| 3241182 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.50 | 36.0 | 3.85e-01 | 77.0% | 94.0% |
D6
medium
residues 732-800_820-931_977-989