←Back to structures

DNA_polymerase

Euk-Vir

Plodia_interpunctella_granulovirus

DNA_polymerase__YP_009330228__Plodia_interpunctella_granulovirus__262175

Identity

Accession:: YP_009330228 ↗
Protein ID:: DNA_polymerase
Kingdom:: euk

Quality

84.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Plodia_interpunctella_granulovirus

TaxID: 262175

Cluster

View cluster (158 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-33_190-437

PDB

Domain cluster: rep: DNA_polymerase__YP_009118564__Condylorrhiza_vestigialis_MNPV__1592576__D196-404

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10108.16 best	DNA_pol_B_exo2	41.8	1.40e-10	85.9%	67.0%
PF03104.26	DNA_pol_B_exo1	85.7	4.60e-24	74.1%	73.6%

D2 medium residues 47-185

PDB

Domain cluster: rep: DNA_polymerase__YP_010084862__Shrimp_hemocyte_iridescent_virus__2039780__D2-200

D3 medium residues 438-479_500-528_556-641

PDB

Domain cluster: rep: DNA_polymerase__YP_010086932__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D494-537_560-649

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	39.7	4.00e-10	65.0%	23.8%

D4 medium residues 529-555_642-791

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	60.3	2.20e-16	85.3%	33.1%

D5 medium residues 792-810_893-943_995-1015

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lxuX06	1.25.40.710	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.60	47.0	3.45e-01	85.7%	52.5%
4dloB02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	45.0	4.17e-01	84.6%	85.5%
2e2eA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	43.0	3.71e-01	86.8%	49.0%
2kckA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	43.0	4.03e-01	83.5%	66.1%
8d7hD01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.55	37.0	3.09e-01	70.3%	74.6%
2l6jA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	42.0	3.95e-01	86.8%	73.9%
5domA00	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.51	39.0	3.93e-01	81.3%	100.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3763416	109.4.1.18 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA	0.74	56.0	3.69e-01	81.3%	37.6%
3615504	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	46.0	3.16e-01	100.0%	80.8%

D6 medium residues 811-892

PDB

Domain cluster: rep: DNA_polymerase__YP_009513145__Agrotis_segetum_granulovirus__10464__D860-955

D7 medium residues 944-994

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3r7aB00	3.40.50.1240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like	0.65	48.0	3.14e-01	80.4%	18.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4658720	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.55	43.0	3.72e-01	94.1%	57.8%