DNA_polymerase

Euk-Vir

Fowl_aviadenovirus_6

DNA_polymerase__YP_009505655__Fowl_aviadenovirus_6__172862

Identity

76.3 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Fowl_aviadenovirus_6

TaxID: 172862

View cluster (24 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-164

PDB

Domain cluster: rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D69-178

D2 medium residues 216-457

PDB

Domain cluster: rep: DNA_polymerase__YP_004191813__Fowl_aviadenovirus_E__190065__D141-375

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	33.5	3.10e-08	30.6%	15.8%

D3 medium residues 458-556

PDB

Domain cluster: rep: DNA_polyermase__YP_009112716__Psittacine_adenovirus_3__1580497__D391-479

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	89.0	4.60e-25	98.0%	19.4%

D4 medium residues 689-803

PDB

Domain cluster: rep: DNA_polymerase__NP_040516__Human_mastadenovirus_C__129951__D703-805

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	90.2	2.00e-25	100.0%	22.0%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5l73A00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	41.0	3.66e-01	81.7%	94.3%
2wuhA00	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.54	41.0	3.67e-01	80.0%	97.5%
5y4mA00	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.53	40.0	3.67e-01	79.1%	99.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4060951	4968.1.1.1 ↗	a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2	0.83	60.0	6.88e-01	93.9%	100.0%
4060282	4968.1.1.1 ↗	a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2	0.83	56.0	6.64e-01	89.6%	100.0%
3680878	304.48.1.17 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2	0.81	65.0	4.56e-01	100.0%	30.0%
4651639	2484.1.1.36 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2	0.79	64.0	4.39e-01	100.0%	27.2%
4182877	4968.1.1.1 ↗	a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2	0.78	58.0	6.21e-01	95.7%	88.0%

D5 medium residues 1104-1246

PDB

Domain cluster: rep: DNA_polymerase__YP_004346921__Fowl_aviadenovirus_C__190063__D1060-1206