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DNA_polymerase_catalytic_subunit

Euk-Vir

Gallid_alphaherpesvirus_2

DNA_polymerase_catalytic_subunit__YP_001033959__Gallid_alphaherpesvirus_2__10390

Identity

Accession:
YP_001033959 ↗
Protein ID:
DNA_polymerase_catalytic_subunit
Kingdom:
euk

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

Cluster

View cluster (158 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 184-287
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_066862__Gallid_alphaherpesvirus_3__35250__D182-283
D2 high residues 938-1079_1113-1164
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_073324__Meleagrid_alphaherpesvirus_1__37108__D926-999_1042-1063_1105-1149
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 115.2 4.70e-33 92.8% 32.9%
D3 medium residues 57-127
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_009176907__Testudinid_alphaherpesvirus_3__2560801__D30-83
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4844112 1058.1.1.1 ↗ extended segments › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › PF31254 0.85 70.0 6.77e-01 87.3% 80.8%
2732224 1058.1.1.1 ↗ extended segments › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › PF31254 0.84 69.0 6.62e-01 87.3% 79.7%
D4 medium residues 128-181_295-343
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_944403__Psittacid_alphaherpesvirus_1__50294__D105-157_257-307
D5 medium residues 351-582
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_401712__Human_gammaherpesvirus_4__10376__D288-457
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03104.26 best DNA_pol_B_exo1 178.3 2.50e-52 78.9% 74.4%
D6 medium residues 688-926
PDB
Domain cluster: rep: NC_042352.1__YP_009639584.1__FGG68_gp42__00043__D422-604
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 316.8 3.40e-94 100.0% 51.4%
D7 medium residues 1174-1210
PDB