DNA_polymerase_catalytic_subunit

Euk-Vir

Human_alphaherpesvirus_1

DNA_polymerase_catalytic_subunit__YP_009137105__Human_alphaherpesvirus_1__10298

Identity

78.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Human_alphaherpesvirus_1

TaxID: 10298

View cluster (158 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 144-201_303-352

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_944403__Psittacid_alphaherpesvirus_1__50294__D105-157_257-307

D2 high residues 203-298

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_066862__Gallid_alphaherpesvirus_3__35250__D182-283

D3 high residues 366-592

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_401712__Human_gammaherpesvirus_4__10376__D288-457

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	189.0	1.30e-55	78.4%	72.3%

D4 medium residues 63-143

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_009176907__Testudinid_alphaherpesvirus_3__2560801__D30-83

D5 medium residues 709-879

PDB

Domain cluster: rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00427__D428-563_922-933

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	209.8	9.50e-62	98.2%	35.1%

D6 medium residues 928-1027_1157-1211

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_073324__Meleagrid_alphaherpesvirus_1__37108__D926-999_1042-1063_1105-1149

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	68.3	8.40e-19	89.0%	23.8%

D7 medium residues 1028-1096_1139-1156

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_009342373__Spheniscid_alphaherpesvirus_1__2560777__D1027-1089

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	60.7	1.60e-16	100.0%	16.1%