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DNA_polymerase_catalytic_subunit

Euk-Vir

Hawaiian_green_turtle_herpesvirus

DNA_polymerase_catalytic_subunit__YP_009207091__Hawaiian_green_turtle_herpesvirus__70564

Identity

Accession:: YP_009207091 ↗
Protein ID:: DNA_polymerase_catalytic_subunit
Kingdom:: euk

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Hawaiian_green_turtle_herpesvirus

TaxID: 70564

Cluster

View cluster (158 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 310-533

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_401712__Human_gammaherpesvirus_4__10376__D288-457

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10108.16 best	DNA_pol_B_exo2	25.8	1.10e-05	84.4%	60.4%
PF03104.26	DNA_pol_B_exo1	148.2	3.80e-43	78.1%	74.8%

D2 medium residues 26-120

PDB

D3 medium residues 121-309

PDB

Domain cluster: rep: DNA_polymerase__YP_010084862__Shrimp_hemocyte_iridescent_virus__2039780__D2-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	39.6	5.80e-10	34.9%	24.0%

D4 medium residues 626-644_779-886

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_002608259__Human_herpesvirus_5__10359__D703-718_902-984

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	96.0	3.20e-27	81.9%	19.4%

D5 medium residues 645-683_749-778

PDB

Domain cluster: rep: rh87__YP_068180__Macacine_betaherpesvirus_3__47929__D595-644_698-744

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	40.5	2.20e-10	60.9%	8.6%
PF00136.27	DNA_pol_B	26.9	3.00e-06	49.3%	6.6%

D6 medium residues 684-748

PDB

Domain cluster: rep: DNA_polymerase__YP_008052566__Phaeocystis_globosa_virus__251749__D724-746_869-928

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	79.0	4.60e-22	100.0%	13.9%

D7 medium residues 887-1003_1061-1079

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_182359__Gallid_alphaherpesvirus_1__10386__D880-987

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	64.7	9.90e-18	97.1%	23.6%