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DNA_polymerase_catalytic_subunit

Euk-Vir

Equid_alphaherpesvirus_1

DNA_polymerase_catalytic_subunit__YP_053075__Equid_alphaherpesvirus_1__10326

Identity

Accession:
YP_053075 ↗
Protein ID:
DNA_polymerase_catalytic_subunit
Kingdom:
euk

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_1

TaxID: 10326

Cluster

View cluster (158 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 118-175_310-347
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_944403__Psittacid_alphaherpesvirus_1__50294__D105-157_257-307
D2 high residues 957-1096_1118-1171
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_073324__Meleagrid_alphaherpesvirus_1__37108__D926-999_1042-1063_1105-1149
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 120.1 1.60e-34 91.2% 33.1%
D3 medium residues 176-209_238-309
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__NP_066862__Gallid_alphaherpesvirus_3__35250__D182-283
D4 medium residues 356-587
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_401712__Human_gammaherpesvirus_4__10376__D288-457
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03104.26 best DNA_pol_B_exo1 208.3 1.70e-61 78.9% 74.4%
D5 medium residues 881-956
PDB
Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_002608259__Human_herpesvirus_5__10359__D703-718_902-984
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 95.0 6.60e-27 100.0% 17.9%