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DNA_polymerase_delta_catalytic_subunit
Euk-VirPithovirus_sibericum
DNA_polymerase_delta_catalytic_subunit__YP_009000951__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009000951 ↗
- Protein ID:
- DNA_polymerase_delta_catalytic_subunit
- Kingdom:
- euk
Quality
74.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (158 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 210-434
Domain cluster:
rep: B-family_DNA_polymerase__YP_009507574__Heterosigma_akashiwo_virus_01__97195__D190-438
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03104.26 best | DNA_pol_B_exo1 | 109.5 | 2.50e-31 | 75.1% | 73.6% |
D2
medium
residues 1-45_152-207
D3
medium
residues 46-151
Domain cluster:
representative
CATH (82)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wg4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.75 | 52.0 | 5.94e-01 | 98.1% | 98.7% |
| 3rrkA01 | 3.30.70.2170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 49.0 | 5.73e-01 | 97.2% | 98.6% |
| 1l3kA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.74 | 52.0 | 5.81e-01 | 99.1% | 92.9% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 56.0 | 5.59e-01 | 100.0% | 79.4% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.73 | 56.0 | 6.03e-01 | 100.0% | 95.6% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 53.0 | 5.66e-01 | 100.0% | 89.9% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.72 | 37.0 | 3.94e-01 | 75.5% | 55.8% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 55.0 | 5.64e-01 | 100.0% | 84.2% |
| 2lxiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.71 | 53.0 | 5.64e-01 | 100.0% | 90.1% |
| 3to8A02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.71 | 52.0 | 5.46e-01 | 99.1% | 85.4% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.71 | 55.0 | 5.95e-01 | 99.1% | 98.9% |
| 4iyqA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 54.0 | 5.45e-01 | 100.0% | 80.4% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.70 | 52.0 | 5.68e-01 | 100.0% | 95.3% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 54.0 | 5.47e-01 | 100.0% | 81.9% |
| 1nxiA00 | 3.30.70.970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like | 0.70 | 52.0 | 4.85e-01 | 100.0% | 62.9% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 57.0 | 5.72e-01 | 100.0% | 87.7% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 53.0 | 5.44e-01 | 100.0% | 83.5% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 53.0 | 5.40e-01 | 100.0% | 83.3% |
| 3hheA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 46.0 | 5.21e-01 | 77.4% | 91.0% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 54.0 | 5.74e-01 | 98.1% | 94.7% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 52.0 | 5.59e-01 | 100.0% | 93.3% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 53.0 | 5.53e-01 | 100.0% | 86.9% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 51.0 | 5.61e-01 | 96.2% | 96.5% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 51.0 | 5.34e-01 | 100.0% | 84.7% |
| 2cpiA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.68 | 50.0 | 5.54e-01 | 95.3% | 100.0% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 51.0 | 5.29e-01 | 100.0% | 84.8% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.68 | 59.0 | 6.03e-01 | 99.1% | 99.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.68 | 53.0 | 5.59e-01 | 94.3% | 92.7% |
| 3qjlA01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 61.0 | 5.90e-01 | 100.0% | 97.5% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.67 | 53.0 | 5.59e-01 | 93.4% | 93.6% |
| 3w9iA06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.67 | 58.0 | 5.98e-01 | 99.1% | 99.0% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 50.0 | 5.38e-01 | 89.6% | 95.5% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.66 | 57.0 | 5.81e-01 | 96.2% | 98.0% |
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 55.0 | 5.70e-01 | 100.0% | 97.0% |
| 5aj3F00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.66 | 56.0 | 5.31e-01 | 100.0% | 78.9% |
| 3i4hX01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 60.0 | 5.62e-01 | 100.0% | 94.5% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.65 | 45.0 | 5.04e-01 | 91.5% | 93.8% |
| 2op5B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 56.0 | 5.72e-01 | 100.0% | 99.0% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 51.0 | 5.08e-01 | 100.0% | 82.2% |
| 3bf4A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 56.0 | 5.78e-01 | 99.1% | 100.0% |
| 1jmtA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 55.0 | 5.69e-01 | 99.1% | 99.0% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 54.0 | 5.59e-01 | 100.0% | 98.0% |
| 2xliA01 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.64 | 51.0 | 4.49e-01 | 100.0% | 57.7% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.64 | 57.0 | 5.56e-01 | 100.0% | 95.8% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 55.0 | 5.57e-01 | 100.0% | 95.1% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 55.0 | 5.56e-01 | 100.0% | 94.3% |
| 2qycA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 52.0 | 5.36e-01 | 100.0% | 93.1% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.63 | 47.0 | 5.12e-01 | 90.6% | 96.5% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.63 | 48.0 | 4.86e-01 | 87.7% | 81.1% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.63 | 47.0 | 4.78e-01 | 88.7% | 80.6% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 5.51e-01 | 100.0% | 98.0% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.63 | 43.0 | 4.67e-01 | 91.5% | 88.1% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 55.0 | 4.25e-01 | 100.0% | 76.4% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 51.0 | 5.06e-01 | 100.0% | 85.6% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 5.26e-01 | 100.0% | 99.0% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 44.0 | 4.62e-01 | 97.2% | 83.2% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 5.34e-01 | 100.0% | 97.1% |
| 3b8mC01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.61 | 53.0 | 4.78e-01 | 98.1% | 99.3% |
| 1vqyB01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 49.0 | 5.18e-01 | 100.0% | 100.0% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 5.34e-01 | 100.0% | 98.1% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 53.0 | 5.22e-01 | 98.1% | 100.0% |
| 2ldyA01 | 3.30.70.1820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › L1 transposable element, RRM domain | 0.60 | 50.0 | 5.21e-01 | 95.3% | 100.0% |
| 2okqB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 52.0 | 5.07e-01 | 100.0% | 88.1% |
| 2hfvA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.59 | 40.0 | 4.59e-01 | 98.1% | 97.4% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 5.22e-01 | 100.0% | 99.0% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 52.0 | 5.07e-01 | 100.0% | 99.1% |
| 4c98A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.61e-01 | 93.4% | 95.6% |
| 1qf6A02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.58 | 41.0 | 4.13e-01 | 91.5% | 72.6% |
| 1t0tV02 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.58 | 49.0 | 4.83e-01 | 100.0% | 88.3% |
| 4k05A02 | 3.90.1150.140 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.58 | 50.0 | 4.40e-01 | 93.4% | 70.1% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 52.0 | 5.09e-01 | 100.0% | 99.1% |
| 4c97A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 4.69e-01 | 96.2% | 93.3% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 51.0 | 4.99e-01 | 99.1% | 98.3% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 43.0 | 3.16e-01 | 79.2% | 66.4% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.57 | 46.0 | 4.74e-01 | 100.0% | 93.0% |
| 3m86A00 | 2.60.40.2020 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 4.19e-01 | 94.3% | 74.8% |
| 3dcaA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 49.0 | 4.68e-01 | 100.0% | 81.5% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 40.0 | 3.71e-01 | 74.5% | 93.5% |
| 4lbhA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.55 | 43.0 | 4.56e-01 | 100.0% | 98.9% |
| 3rpfA00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.54 | 43.0 | 3.93e-01 | 88.7% | 76.6% |
| 3qa8G01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 44.0 | 3.25e-01 | 91.5% | 50.7% |
| 2wp4B00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.53 | 42.0 | 3.92e-01 | 89.6% | 69.7% |
ECOD (95)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035224 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.77 | 58.0 | 6.26e-01 | 100.0% | 92.2% |
| 4243267 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.77 | 58.0 | 4.32e-01 | 100.0% | 33.6% |
| 3853832 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.76 | 63.0 | 6.63e-01 | 100.0% | 98.9% |
| 3696880 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.75 | 55.0 | 6.10e-01 | 95.3% | 95.3% |
| 3838763 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.74 | 56.0 | 6.17e-01 | 97.2% | 100.0% |
| 3177510 | 304.9.1.40 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › BRAP2 | 0.73 | 58.0 | 5.55e-01 | 100.0% | 73.3% |
| 3788989 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.73 | 51.0 | 5.78e-01 | 100.0% | 96.2% |
| 4204468 | 304.44.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C | 0.72 | 58.0 | 6.05e-01 | 99.1% | 95.8% |
| 3941222 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.71 | 56.0 | 5.79e-01 | 100.0% | 88.0% |
| 3721754 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.71 | 58.0 | 5.63e-01 | 100.0% | 77.5% |
| 1288930 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.71 | 63.0 | 6.50e-01 | 100.0% | 100.0% |
| 3236680 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.71 | 62.0 | 5.25e-01 | 100.0% | 58.8% |
| 3740046 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.71 | 56.0 | 5.26e-01 | 100.0% | 68.5% |
| 3895241 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.71 | 55.0 | 5.91e-01 | 100.0% | 96.7% |
| 3744164 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.71 | 57.0 | 5.22e-01 | 100.0% | 66.7% |
| 3715670 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.71 | 61.0 | 6.30e-01 | 98.1% | 100.0% |
| 3930833 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.70 | 48.0 | 5.41e-01 | 95.3% | 93.8% |
| 4026023 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.70 | 57.0 | 5.83e-01 | 100.0% | 91.0% |
| 3915879 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.70 | 64.0 | 6.36e-01 | 99.1% | 95.5% |
| 3375055 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.70 | 61.0 | 6.29e-01 | 97.2% | 100.0% |
| 3216224 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.70 | 53.0 | 5.60e-01 | 99.1% | 88.4% |
| 3368695 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 62.0 | 4.20e-01 | 100.0% | 26.7% |
| 3579336 | 304.5.1.23 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I | 0.69 | 51.0 | 5.09e-01 | 100.0% | 74.5% |
| 3575538 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.69 | 51.0 | 5.03e-01 | 100.0% | 73.6% |
| 3250928 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 49.0 | 5.51e-01 | 99.1% | 98.8% |
| 3781323 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.69 | 57.0 | 5.89e-01 | 100.0% | 94.0% |
| 3683773 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.69 | 64.0 | 5.93e-01 | 100.0% | 92.3% |
| 4649118 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.69 | 64.0 | 4.21e-01 | 100.0% | 29.9% |
| 2528752 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.69 | 58.0 | 6.02e-01 | 100.0% | 99.0% |
| 3558199 | 4969.1.1.4 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › POL3_N | 0.69 | 62.0 | 6.25e-01 | 99.1% | 100.0% |
| 4110626 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.69 | 62.0 | 6.29e-01 | 99.1% | 100.0% |
| None | — | 0.68 | 63.0 | 3.82e-01 | 100.0% | 55.2% | |
| 4173501 | 304.44.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C | 0.68 | 55.0 | 5.65e-01 | 99.1% | 91.0% |
| 3743759 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.68 | 56.0 | 5.48e-01 | 100.0% | 80.9% |
| 5070158 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.68 | 52.0 | 3.64e-01 | 100.0% | 25.3% |
| 3788812 | 304.114.1.6 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 | 0.68 | 53.0 | 4.07e-01 | 100.0% | 36.7% |
| 3741555 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.68 | 63.0 | 4.83e-01 | 100.0% | 53.9% |
| 3633027 | 304.57.1.2 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › Pop8 | 0.68 | 62.0 | 5.95e-01 | 100.0% | 91.7% |
| None | — | 0.68 | 58.0 | 3.58e-01 | 100.0% | 15.7% | |
| None | — | 0.68 | 62.0 | 4.21e-01 | 100.0% | 96.2% | |
| 4928686 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.68 | 51.0 | 5.48e-01 | 99.1% | 92.2% |
| 3731090 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.68 | 57.0 | 5.92e-01 | 98.1% | 99.0% |
| 3943661 | 304.5.1.13 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 | 0.68 | 58.0 | 5.96e-01 | 100.0% | 99.0% |
| 3480548 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.68 | 61.0 | 6.18e-01 | 99.1% | 100.0% |
| 3288140 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.67 | 56.0 | 5.39e-01 | 99.1% | 79.2% |
| 3550113 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.67 | 61.0 | 5.80e-01 | 98.1% | 99.2% |
| 3759055 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.67 | 61.0 | 5.80e-01 | 98.1% | 99.2% |
| 3600590 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 60.0 | 6.09e-01 | 100.0% | 98.1% |
| 3711289 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.67 | 62.0 | 6.24e-01 | 100.0% | 100.0% |
| 4554366 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.67 | 61.0 | 5.99e-01 | 99.1% | 97.4% |
| 3594040 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.67 | 54.0 | 5.24e-01 | 100.0% | 77.5% |
| 3733897 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 54.0 | 5.44e-01 | 100.0% | 87.0% |
| 4023966 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.66 | 53.0 | 4.88e-01 | 100.0% | 65.7% |
| 3728277 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 58.0 | 5.84e-01 | 100.0% | 93.6% |
| 3602951 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.66 | 52.0 | 5.26e-01 | 92.5% | 85.7% |
| 4172769 | 304.9.1.68 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PRE_C2HC | 0.66 | 48.0 | 5.27e-01 | 99.1% | 96.5% |
| 3508551 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.65 | 61.0 | 5.81e-01 | 100.0% | 98.3% |
| 3800445 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.65 | 59.0 | 4.66e-01 | 100.0% | 54.5% |
| 3577533 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.65 | 59.0 | 5.69e-01 | 99.1% | 98.3% |
| 3783087 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 54.0 | 5.24e-01 | 100.0% | 81.7% |
| 4950064 | 327.16.1.22 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27275 | 0.65 | 42.0 | 4.94e-01 | 90.6% | 98.6% |
| 4001734 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.65 | 59.0 | 5.81e-01 | 100.0% | 93.9% |
| 3540722 | 304.44.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › JAG1 | 0.65 | 58.0 | 5.67e-01 | 98.1% | 90.4% |
| 5071626 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.64 | 54.0 | 4.32e-01 | 100.0% | 45.0% |
| 4957503 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.64 | 54.0 | 4.65e-01 | 99.1% | 58.2% |
| 3197049 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 51.0 | 5.07e-01 | 100.0% | 83.6% |
| 332301 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.63 | 55.0 | 5.53e-01 | 100.0% | 93.5% |
| 3753477 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.63 | 57.0 | 4.31e-01 | 100.0% | 44.7% |
| 4022825 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 52.0 | 5.28e-01 | 100.0% | 90.5% |
| 3853833 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.63 | 57.0 | 4.91e-01 | 100.0% | 69.1% |
| 4865069 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.63 | 52.0 | 5.30e-01 | 100.0% | 93.2% |
| 3207962 | 304.9.1.121 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, Smg4_UPF3 | 0.63 | 55.0 | 4.19e-01 | 100.0% | 42.1% |
| 166595 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.63 | 54.0 | 5.53e-01 | 100.0% | 99.0% |
| 3515531 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.63 | 56.0 | 3.53e-01 | 100.0% | 23.7% |
| 3514532 | 304.9.1.42 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRP7 | 0.62 | 46.0 | 3.72e-01 | 86.8% | 40.0% |
| 5188 | 304.4.1.17 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MmlI | 0.62 | 54.0 | 5.51e-01 | 100.0% | 97.1% |
| 3177677 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.62 | 55.0 | 5.52e-01 | 100.0% | 93.6% |
| 4205906 | 304.4.1.33 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Darcynin | 0.62 | 52.0 | 5.08e-01 | 100.0% | 84.3% |
| 3932594 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.62 | 53.0 | 5.42e-01 | 98.1% | 100.0% |
| 3491594 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.61 | 51.0 | 4.98e-01 | 100.0% | 81.7% |
| 3456620 | 304.9.1.9 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_2 | 0.61 | 56.0 | 4.80e-01 | 100.0% | 64.2% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.61 | 39.0 | 4.61e-01 | 89.6% | 98.6% |
| 4592824 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.60 | 50.0 | 4.28e-01 | 91.5% | 97.1% |
| 3690383 | 304.4.1.58 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dehydratase_hem | 0.60 | 48.0 | 4.87e-01 | 97.2% | 86.7% |
| 3726103 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 49.0 | 5.05e-01 | 100.0% | 94.0% |
| 3206013 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.60 | 36.0 | 3.26e-01 | 72.6% | 44.3% |
| 4105404 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.60 | 45.0 | 4.45e-01 | 87.7% | 74.8% |
| 3624917 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 53.0 | 5.15e-01 | 100.0% | 87.5% |
| 3918290 | 304.9.1.5 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Transposase_22 | 0.59 | 48.0 | 5.06e-01 | 95.3% | 100.0% |
| 3875700 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 42.0 | 4.68e-01 | 89.6% | 100.0% |
| 4187121 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.57 | 46.0 | 4.47e-01 | 87.7% | 76.7% |
| 4138489 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.57 | 46.0 | 4.58e-01 | 89.6% | 84.5% |
| 3738488 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 46.0 | 4.86e-01 | 90.6% | 100.0% |
| 3688199 | 327.19.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain | 0.56 | 39.0 | 4.27e-01 | 80.2% | 91.8% |
| 4934295 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.55 | 33.0 | 3.43e-01 | 70.8% | 63.0% |
D4
medium
residues 478-489_505-657
Domain cluster:
rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00427__D428-563_922-933
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00136.27 best | DNA_pol_B | 142.7 | 2.20e-41 | 98.8% | 31.1% |
D5
medium
residues 490-504_658-759
Domain cluster:
rep: DNA_polymerase__YP_008052566__Phaeocystis_globosa_virus__251749__D762-780_942-1082
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00136.27 best | DNA_pol_B | 66.4 | 3.20e-18 | 99.2% | 21.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qexA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.85 | 70.0 | 5.33e-01 | 85.5% | 95.9% |
| 1q8iA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.82 | 71.0 | 5.67e-01 | 89.7% | 74.6% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.82 | 65.0 | 6.54e-01 | 82.9% | 95.7% |
| 2py5A02 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.70 | 58.0 | 4.92e-01 | 86.3% | 78.2% |
| 4cyuA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.55 | 42.0 | 3.88e-01 | 81.2% | 94.2% |
| 1tm0A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 39.0 | 3.53e-01 | 77.8% | 82.9% |
| 1kbpA02 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 39.0 | 2.91e-01 | 81.2% | 96.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4231530 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.91 | 77.0 | 6.17e-01 | 88.0% | 99.5% |
| None | — | 0.90 | 74.0 | 4.46e-01 | 84.6% | 38.1% | |
| None | — | 0.90 | 76.0 | 4.60e-01 | 88.0% | 39.1% | |
| 3558196 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.89 | 76.0 | 5.49e-01 | 88.0% | 87.0% |
| 3480546 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.89 | 75.0 | 5.55e-01 | 87.2% | 97.7% |
| 3628202 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.89 | 75.0 | 4.50e-01 | 87.2% | 37.3% |
| 4022366 | 2484.1.1.161 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.89 | 74.0 | 4.44e-01 | 85.5% | 38.7% |
| 4972474 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.89 | 75.0 | 4.47e-01 | 87.2% | 34.2% |
| 3615419 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.88 | 75.0 | 5.22e-01 | 88.9% | 87.6% |
| 3597965 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.88 | 72.0 | 5.47e-01 | 85.5% | 98.8% |
| 3784383 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.88 | 72.0 | 4.88e-01 | 85.5% | 70.5% |
| 4029141 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.87 | 74.0 | 5.54e-01 | 88.9% | 93.5% |
| 3484036 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.87 | 71.0 | 5.21e-01 | 84.6% | 98.5% |
| 3684974 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.87 | 71.0 | 4.31e-01 | 85.5% | 39.1% |
| 3801150 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.87 | 73.0 | 5.26e-01 | 88.0% | 82.7% |
| 3705562 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.86 | 72.0 | 4.36e-01 | 87.2% | 41.5% |
| 3993981 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.86 | 70.0 | 5.49e-01 | 84.6% | 98.7% |
| 3466667 | 2484.1.1.161 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 73.0 | 4.39e-01 | 88.0% | 34.5% |
| 5025209 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.86 | 72.0 | 5.53e-01 | 87.2% | 95.3% |
| 4276636 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.85 | 72.0 | 5.00e-01 | 88.0% | 77.3% |
| 3349591 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.85 | 70.0 | 5.04e-01 | 85.5% | 79.0% |
| 4981193 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.84 | 72.0 | 5.37e-01 | 88.9% | 87.5% |
| 3705695 | 304.48.1.24 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744 | 0.80 | 64.0 | 4.93e-01 | 83.8% | 86.1% |
| 3464384 | 304.48.1.24 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744 | 0.78 | 56.0 | 4.29e-01 | 74.4% | 81.6% |
| 4942685 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.77 | 63.0 | 4.06e-01 | 85.5% | 45.4% |
| 3266689 | 304.48.1.24 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744 | 0.77 | 53.0 | 4.03e-01 | 70.1% | 83.8% |
| 4100823 | 4970.1.1.1 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.76 | 63.0 | 4.83e-01 | 87.2% | 84.0% |
| 3474156 | 304.48.1.24 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744 | 0.75 | 55.0 | 4.15e-01 | 76.1% | 81.5% |
| 4956224 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.75 | 63.0 | 4.84e-01 | 87.2% | 91.5% |
| 4674811 | 304.48.1.17 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 | 0.65 | 58.0 | 4.15e-01 | 96.6% | 89.3% |
| 4989202 | 304.45.1.2 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › DUF4416 | 0.56 | 42.0 | 3.80e-01 | 78.6% | 93.1% |
| 4970138 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.50 | 36.0 | 3.81e-01 | 75.2% | 88.6% |
D6
medium
residues 895-960