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DNA_polymerase_family_X
Euk-VirAcanthamoeba_polyphaga_moumouvirus
DNA_polymerase_family_X__YP_007354481__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007354481 ↗
- Protein ID:
- DNA_polymerase_family_X
- Kingdom:
- euk
Quality
76.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
rep: putative_DNA_polymerase_X_family_protein__YP_009052122__Aureococcus_anophagefferens_virus__1474867__D1-77
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14716.14 best | HHH_8 | 37.4 | 3.70e-09 | 88.9% | 80.8% |
D2
high
residues 94-153
Domain cluster:
rep: putative_family_X_DNA_polymerase__YP_003970091__Cafeteria_roenbergensis_virus_BV-PW1__693272__D100-158
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10391.16 best | DNA_pol_lambd_f | 37.1 | 3.00e-09 | 83.3% | 90.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bpbA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.92 | 75.0 | 7.68e-01 | 95.0% | 89.7% |
| 4i2aA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.91 | 76.0 | 7.67e-01 | 95.0% | 89.8% |
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.78 | 67.0 | 6.44e-01 | 95.0% | 91.2% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.77 | 64.0 | 6.59e-01 | 88.3% | 98.2% |
| 2is9A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 48.0 | 3.95e-01 | 78.3% | 77.0% |
| 4wp2A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 53.0 | 5.36e-01 | 96.7% | 100.0% |
| 4y7dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 44.0 | 2.86e-01 | 78.3% | 43.6% |
| 3bosA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 44.0 | 4.27e-01 | 81.7% | 74.6% |
| 3gwlA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.58 | 41.0 | 3.48e-01 | 76.7% | 52.8% |
| 4l6v600 | 1.10.8.110 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF | 0.56 | 39.0 | 3.16e-01 | 75.0% | 49.6% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.56 | 39.0 | 3.75e-01 | 75.0% | 77.5% |
| 2eqoA01 | 1.10.418.50 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Microtubule-binding protein MIP-T3 | 0.55 | 39.0 | 3.12e-01 | 96.7% | 35.1% |
| 3szpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.06e-01 | 73.3% | 44.9% |
| 2w7yA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 39.0 | 2.89e-01 | 86.7% | 55.9% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 43.0 | 3.29e-01 | 93.3% | 46.2% |
| 4jxjA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.52 | 35.0 | 3.48e-01 | 71.7% | 66.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599217 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.95 | 84.0 | 7.43e-01 | 91.7% | 97.5% |
| 3609715 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.94 | 86.0 | 7.89e-01 | 96.7% | 96.0% |
| 3704913 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.93 | 67.0 | 7.69e-01 | 78.3% | 100.0% |
| 4487941 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.93 | 79.0 | 6.90e-01 | 96.7% | 63.5% |
| 2568242 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.92 | 77.0 | 7.67e-01 | 96.7% | 86.9% |
| 2970 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.91 | 75.0 | 7.55e-01 | 95.0% | 88.3% |
| 2772131 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.89 | 73.0 | 7.35e-01 | 95.0% | 88.1% |
| 3200878 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.89 | 77.0 | 7.71e-01 | 96.7% | 91.7% |
| 1320054 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.89 | 80.0 | 7.91e-01 | 96.7% | 96.8% |
| 4957214 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.84 | 70.0 | 6.88e-01 | 91.7% | 96.9% |
| 5003373 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.83 | 69.0 | 6.76e-01 | 91.7% | 96.9% |
| 4951167 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.82 | 73.0 | 7.10e-01 | 96.7% | 96.9% |
| 4968454 | 102.1.1.160 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Cdd1 | 0.81 | 70.0 | 6.43e-01 | 93.3% | 90.7% |
| 3995392 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.78 | 54.0 | 6.05e-01 | 91.7% | 95.6% |
| 4997104 | 102.1.1.21 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_lambd_f | 0.77 | 70.0 | 5.84e-01 | 100.0% | 65.0% |
| 4321047 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.73 | 63.0 | 4.57e-01 | 100.0% | 41.4% |
| 3600673 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 56.0 | 5.31e-01 | 83.3% | 78.6% |
| 3464309 | 103.1.1.34 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical | 0.72 | 57.0 | 3.98e-01 | 100.0% | 27.4% |
| 4993912 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.71 | 60.0 | 5.69e-01 | 98.3% | 78.6% |
| 3803934 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 53.0 | 5.54e-01 | 85.0% | 92.7% |
| 5061335 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.67 | 56.0 | 4.70e-01 | 98.3% | 55.6% |
| 5038202 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.66 | 54.0 | 4.26e-01 | 98.3% | 43.5% |
| 3448065 | 101.1.10.45 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PIR2-like_helical | 0.66 | 57.0 | 3.99e-01 | 100.0% | 29.7% |
| 3990749 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.66 | 50.0 | 5.09e-01 | 100.0% | 83.3% |
| 3446661 | 103.1.1.34 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical | 0.65 | 57.0 | 3.89e-01 | 100.0% | 29.0% |
| 1566589 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.63 | 53.0 | 5.36e-01 | 96.7% | 100.0% |
| 3386163 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.62 | 53.0 | 4.17e-01 | 100.0% | 58.6% |
| 3308386 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.60 | 48.0 | 3.43e-01 | 91.7% | 88.2% |
| 3191134 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 49.0 | 3.48e-01 | 98.3% | 54.4% |
| 4994698 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.53 | 41.0 | 2.92e-01 | 86.7% | 49.7% |
| 2141316 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 39.0 | 3.23e-01 | 81.7% | 59.6% |
| 4378285 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.52 | 37.0 | 2.45e-01 | 75.0% | 41.6% |
D3
high
residues 161-273
Domain cluster:
rep: LC554890.1__BCG50042.1__X__00024__D127-241
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14792.13 best | DNA_pol_B_palm | 98.6 | 3.60e-28 | 100.0% | 97.4% |
| PF01909.30 | NTP_transf_2 | 26.7 | 8.20e-06 | 95.6% | 65.6% |
D4
high
residues 289-349
Domain cluster:
rep: SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00440__D267-324
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14791.12 best | DNA_pol_B_thumb | 59.1 | 4.20e-16 | 95.1% | 84.1% |