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DNA_polymerase_processivity_subunit
Euk-VirEquid_alphaherpesvirus_3
DNA_polymerase_processivity_subunit__YP_009054921__Equid_alphaherpesvirus_3__80341
Identity
- Accession:
- YP_009054921 ↗
- Protein ID:
- DNA_polymerase_processivity_subunit
- Kingdom:
- euk
Quality
68.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_3
TaxID: 80341
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-152_166-177
Domain cluster:
rep: DNA_polymerase_processivity_subunit__YP_009342361__Spheniscid_alphaherpesvirus_1__2560777__D21-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02282.22 best | Herpes_UL42 | 51.7 | 1.30e-13 | 94.6% | 76.6% |
D2
high
residues 193-340
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02282.22 best | Herpes_UL42 | 32.3 | 1.20e-07 | 97.3% | 99.4% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.90 | 71.0 | 5.60e-01 | 100.0% | 44.6% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.83 | 63.0 | 5.17e-01 | 99.3% | 46.2% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 57.0 | 4.93e-01 | 96.6% | 48.4% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 61.0 | 4.98e-01 | 100.0% | 46.5% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 67.0 | 5.29e-01 | 99.3% | 47.7% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 67.0 | 5.19e-01 | 100.0% | 45.6% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 59.0 | 4.84e-01 | 100.0% | 46.7% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.67 | 28.0 | 3.70e-01 | 100.0% | 69.1% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.66 | 30.0 | 3.99e-01 | 99.3% | 80.3% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.66 | 56.0 | 4.52e-01 | 100.0% | 49.4% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 27.0 | 4.11e-01 | 96.6% | 98.3% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.56 | 28.0 | 3.23e-01 | 89.2% | 63.5% |
| 1c8uA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 34.0 | 3.76e-01 | 100.0% | 77.4% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 35.0 | 3.59e-01 | 91.2% | 65.5% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 20.0 | 3.31e-01 | 90.5% | 100.0% |
| 2bvbA00 | 2.60.120.710 | Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 | 0.54 | 33.0 | 3.47e-01 | 100.0% | 65.0% |
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 24.0 | 3.43e-01 | 91.9% | 98.3% |
| 2dslA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 34.0 | 3.84e-01 | 100.0% | 81.7% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 36.0 | 3.91e-01 | 100.0% | 81.8% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 34.0 | 3.71e-01 | 100.0% | 78.4% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 35.0 | 3.76e-01 | 100.0% | 80.6% |
| 4da2A01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 27.0 | 3.38e-01 | 96.6% | 88.6% |
| 2cwzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 36.0 | 3.73e-01 | 100.0% | 77.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 71028 | 227.1.1.5 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_UL42 | 0.89 | 72.0 | 7.72e-01 | 100.0% | 94.7% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 62.0 | 6.12e-01 | 100.0% | 77.3% |
| 4057937 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.79 | 62.0 | 6.50e-01 | 100.0% | 89.6% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 61.0 | 6.54e-01 | 98.6% | 91.5% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 62.0 | 6.54e-01 | 100.0% | 93.3% |
| 1178584 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.77 | 67.0 | 6.82e-01 | 99.3% | 93.8% |
| 1082804 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.76 | 67.0 | 6.78e-01 | 100.0% | 93.2% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.75 | 59.0 | 6.38e-01 | 100.0% | 96.8% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.71 | 61.0 | 6.28e-01 | 100.0% | 95.0% |
| 3022412 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.69 | 56.0 | 5.72e-01 | 100.0% | 88.7% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.66 | 57.0 | 5.75e-01 | 100.0% | 90.7% |
| 3406311 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.66 | 58.0 | 5.78e-01 | 100.0% | 89.7% |
| 3480669 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.66 | 56.0 | 5.69e-01 | 100.0% | 92.3% |
| 3507498 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.65 | 56.0 | 5.58e-01 | 100.0% | 90.0% |
| 4006143 | 3943.1.1.5 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N | 0.58 | 30.0 | 3.60e-01 | 70.9% | 75.8% |
| 4177859 | 2.1.1.84 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N | 0.54 | 23.0 | 3.25e-01 | 90.5% | 84.6% |
| 4420797 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 25.0 | 3.09e-01 | 91.2% | 71.8% |
| 4506540 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 37.0 | 3.99e-01 | 100.0% | 83.1% |
| 4161829 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 24.0 | 3.17e-01 | 91.9% | 80.0% |
| 5063753 | 218.4.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 | 0.51 | 24.0 | 3.12e-01 | 85.1% | 81.3% |