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DNA_polymerase_processivity_subunit

Euk-Vir

Canid_alphaherpesvirus_1

DNA_polymerase_processivity_subunit__YP_009252244__Canid_alphaherpesvirus_1__170325

Identity

Accession:
YP_009252244 ↗
Protein ID:
DNA_polymerase_processivity_subunit
Kingdom:
euk

Quality

74.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-160
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02282.22 best Herpes_UL42 71.3 1.20e-19 86.9% 55.8%
D2 high residues 176-223_245-312
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 79.0 5.97e-01 99.1% 46.2%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 71.0 5.62e-01 95.7% 48.4%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 76.0 5.47e-01 100.0% 45.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 75.0 5.65e-01 99.1% 47.5%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 75.0 5.73e-01 100.0% 47.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 74.0 5.58e-01 100.0% 46.9%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 73.0 5.63e-01 100.0% 47.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 71.0 5.51e-01 99.1% 47.9%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 71.0 5.55e-01 100.0% 48.7%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 71.0 5.46e-01 100.0% 47.3%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 65.0 6.48e-01 100.0% 94.1%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 63.0 6.12e-01 100.0% 92.3%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.68 62.0 6.07e-01 100.0% 94.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.64 32.0 3.30e-01 100.0% 49.6%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 4.45e-01 100.0% 89.9%
2ov9C01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 43.0 4.02e-01 100.0% 65.3%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 43.0 4.26e-01 100.0% 76.8%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 44.0 3.49e-01 87.9% 91.7%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.55 40.0 3.77e-01 100.0% 63.5%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 43.0 3.20e-01 100.0% 34.0%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.62e-01 86.2% 58.8%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 4.05e-01 100.0% 69.7%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 46.0 3.56e-01 94.0% 97.3%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 42.0 4.14e-01 100.0% 77.4%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.91e-01 100.0% 64.9%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.72e-01 86.2% 63.4%
2w3xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 46.0 4.26e-01 100.0% 75.0%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 45.0 3.46e-01 94.0% 97.5%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 42.0 3.97e-01 100.0% 71.5%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 48.0 4.63e-01 100.0% 98.5%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 46.0 4.28e-01 96.6% 99.3%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 44.0 3.44e-01 94.0% 98.9%
2nujA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 44.0 4.07e-01 100.0% 71.6%
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 4.12e-01 100.0% 78.9%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 43.0 3.31e-01 94.0% 83.9%
3s4kA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 4.04e-01 100.0% 79.8%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.51 26.0 2.87e-01 71.6% 55.6%
2cwzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 4.06e-01 100.0% 77.4%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 41.0 3.76e-01 100.0% 66.0%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.99e-01 100.0% 75.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1924008 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.83 78.0 7.57e-01 100.0% 91.4%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.83 77.0 7.29e-01 99.1% 90.4%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.82 76.0 7.27e-01 98.3% 90.8%
3256903 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.81 76.0 7.20e-01 100.0% 91.9%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 77.0 6.87e-01 100.0% 77.3%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 75.0 7.20e-01 98.3% 91.5%
143428 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 74.0 7.33e-01 100.0% 93.3%
3478160 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.81 76.0 7.34e-01 100.0% 94.5%
4991675 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.39e-01 100.0% 93.6%
3551142 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 76.0 6.95e-01 100.0% 84.1%
3873544 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.81 75.0 7.14e-01 100.0% 91.8%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 75.0 7.13e-01 100.0% 89.6%
167574 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 76.0 7.26e-01 100.0% 88.5%
3412152 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 75.0 7.12e-01 100.0% 91.9%
4466445 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 74.0 6.70e-01 100.0% 92.3%
3230925 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 75.0 7.18e-01 100.0% 93.1%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 75.0 7.07e-01 100.0% 91.9%
3921654 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 74.0 7.09e-01 100.0% 91.7%
4517015 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 75.0 7.35e-01 100.0% 93.5%
3292092 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 74.0 7.05e-01 100.0% 93.3%
4948360 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 73.0 7.07e-01 99.1% 88.4%
4456195 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 74.0 7.32e-01 100.0% 95.8%
5037314 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 73.0 7.26e-01 98.3% 95.0%
4057937 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 74.0 7.04e-01 100.0% 89.6%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 74.0 7.24e-01 100.0% 96.8%
3574882 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 73.0 6.91e-01 100.0% 89.1%
4936050 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 7.24e-01 100.0% 93.6%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 7.16e-01 100.0% 91.4%
5037345 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 7.04e-01 100.0% 91.7%
5000467 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 74.0 6.98e-01 100.0% 94.8%
4055466 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 7.26e-01 100.0% 95.2%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 7.12e-01 100.0% 91.4%
4998585 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 72.0 7.18e-01 100.0% 95.0%
3715457 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 73.0 6.61e-01 100.0% 94.1%
4660283 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 73.0 7.12e-01 100.0% 95.2%
3291440 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 64.0 6.63e-01 100.0% 92.7%
5056758 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 67.0 6.76e-01 97.4% 94.8%
4956740 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 71.0 6.94e-01 100.0% 95.2%
5028024 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 70.0 6.75e-01 100.0% 90.0%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.87e-01 100.0% 95.0%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 70.0 6.39e-01 100.0% 90.7%
3183643 243.9.1.4 a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › NuiA_2 0.73 41.0 4.06e-01 100.0% 52.9%
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.73 62.0 6.29e-01 100.0% 92.2%
3291529 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.73 31.0 3.30e-01 100.0% 43.5%
1108129 222.1.1.18 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › RhiE_B 0.55 44.0 4.15e-01 100.0% 71.4%
3250629 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.54 28.0 2.91e-01 100.0% 51.4%
3642325 9.1.1.29 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.54 42.0 3.87e-01 83.6% 73.2%
4506540 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 46.0 4.47e-01 100.0% 83.1%
4430793 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.54 39.0 3.99e-01 100.0% 77.4%
4491679 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.54 46.0 4.38e-01 100.0% 77.9%
4033783 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 43.0 4.20e-01 100.0% 79.8%
4059161 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 46.0 4.20e-01 100.0% 71.6%
4175134 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 42.0 3.82e-01 100.0% 63.2%
4355192 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 46.0 4.16e-01 100.0% 69.4%
119430 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.52 44.0 4.27e-01 100.0% 81.7%
4347156 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.52 44.0 4.24e-01 100.0% 79.3%
3279090 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.52 43.0 4.14e-01 100.0% 78.5%
4006373 222.1.1.3 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio 0.50 41.0 3.62e-01 100.0% 58.9%