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DNA_polymerase_processivity_subunit

Euk-Vir

Murine_roseolovirus

DNA_polymerase_processivity_subunit__YP_009344870__Murine_roseolovirus__1940555

Identity

Accession:
YP_009344870 ↗
Protein ID:
DNA_polymerase_processivity_subunit
Kingdom:
euk

Quality

68.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Murine_roseolovirus

TaxID: 1940555

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-191_275-290
PDB
Domain cluster: rep: ORF59__YP_001129416__Human_gammaherpesvirus_8__37296__D3-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03325.19 best Herpes_PAP 64.2 1.60e-17 39.4% 34.3%
D2 medium residues 192-274
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03325.19 best Herpes_PAP 78.0 8.80e-22 100.0% 48.8%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.94 90.0 6.12e-01 100.0% 33.7%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 81.0 5.41e-01 100.0% 34.8%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.85 78.0 5.17e-01 98.8% 32.6%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 76.0 5.22e-01 98.8% 32.2%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.84 77.0 6.54e-01 97.6% 68.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 76.0 5.24e-01 98.8% 36.1%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 68.0 6.04e-01 98.8% 67.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 72.0 5.01e-01 98.8% 33.5%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 69.0 6.03e-01 100.0% 65.5%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 72.0 5.52e-01 100.0% 47.7%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 70.0 4.92e-01 98.8% 34.0%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.07e-01 100.0% 67.5%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 66.0 4.94e-01 100.0% 40.9%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 38.0 4.31e-01 94.0% 85.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 35.0 3.20e-01 94.0% 44.7%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 33.0 3.40e-01 96.4% 63.0%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.52 35.0 3.30e-01 71.1% 55.3%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 29.0 3.47e-01 89.2% 95.7%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 30.0 3.06e-01 74.7% 57.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1924008 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.97 92.0 7.71e-01 98.8% 64.8%
1082804 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.85 78.0 6.33e-01 98.8% 69.2%
143428 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 76.0 6.55e-01 98.8% 65.8%
138072 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 77.0 6.45e-01 97.6% 66.4%
3292092 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 75.0 6.31e-01 97.6% 67.9%
4372908 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 69.0 5.90e-01 97.6% 60.8%
3934036 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 73.0 6.42e-01 100.0% 73.3%
5052551 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 72.0 6.22e-01 98.8% 65.6%
4057937 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 72.0 6.07e-01 98.8% 65.7%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 5.97e-01 97.6% 65.2%
3598260 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 71.0 6.12e-01 98.8% 71.2%
3223650 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 70.0 5.77e-01 98.8% 69.0%
3719897 227.1.1.18 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.77 70.0 6.02e-01 98.8% 65.6%
4234515 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.75 68.0 5.94e-01 98.8% 67.5%
4983767 218.4.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain 0.67 45.0 4.40e-01 92.8% 63.3%
4599942 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 35.0 3.57e-01 97.6% 61.3%
4960618 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 40.0 3.47e-01 90.4% 47.7%
4242523 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 34.0 3.48e-01 96.4% 65.0%
4162022 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 36.0 3.69e-01 96.4% 70.0%
3632041 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.53 47.0 3.49e-01 95.2% 86.4%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 32.0 2.83e-01 73.5% 41.6%
4956437 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 35.0 3.04e-01 72.3% 45.9%
4088180 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.50 34.0 3.40e-01 96.4% 68.2%