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DNA_polymerase_processivity_subunit

Euk-Vir

Columbid_alphaherpesvirus_1

DNA_polymerase_processivity_subunit__YP_009352950__Columbid_alphaherpesvirus_1__93386

Identity

Accession:
YP_009352950 ↗
Protein ID:
DNA_polymerase_processivity_subunit
Kingdom:
euk

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Columbid_alphaherpesvirus_1

TaxID: 93386

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-149
PDB
Domain cluster: rep: DNA_polymerase_processivity_subunit__YP_009342361__Spheniscid_alphaherpesvirus_1__2560777__D21-149
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02282.22 best Herpes_UL42 59.4 5.50e-16 98.5% 81.2%
D2 high residues 165-221_250-332
PDB
Domain cluster: rep: DNA_polymerase_processivity_subunit__YP_009054921__Equid_alphaherpesvirus_3__80341__D193-340
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.89 73.0 5.70e-01 90.0% 44.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.85 67.0 5.41e-01 88.6% 46.2%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 65.0 6.83e-01 90.0% 93.8%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 67.0 5.12e-01 90.7% 46.0%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 66.0 5.08e-01 90.0% 47.7%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 64.0 6.74e-01 95.0% 100.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 68.0 5.49e-01 100.0% 96.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 67.0 5.40e-01 100.0% 98.4%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 65.0 5.33e-01 100.0% 97.6%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 66.0 5.36e-01 100.0% 97.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 65.0 5.23e-01 100.0% 98.4%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.68 64.0 5.24e-01 100.0% 99.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 24.0 3.62e-01 90.7% 74.2%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 62.0 5.09e-01 100.0% 98.3%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 29.0 3.08e-01 95.7% 53.2%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 40.0 4.22e-01 94.3% 83.9%
1ixlA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 4.04e-01 97.1% 79.8%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.76e-01 96.4% 72.0%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 27.0 3.04e-01 91.4% 64.5%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 28.0 2.93e-01 76.4% 54.3%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 27.0 3.19e-01 89.3% 72.6%
2f3xA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 35.0 3.52e-01 70.0% 88.1%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 46.0 3.69e-01 100.0% 79.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 41.0 4.07e-01 86.4% 97.9%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.50 31.0 3.45e-01 75.0% 78.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 4.35e-01 90.7% 98.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
71028 227.1.1.5 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_UL42 0.85 73.0 7.60e-01 90.0% 94.7%
5037314 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.82 64.0 6.96e-01 87.9% 95.0%
4998585 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 64.0 6.92e-01 90.0% 95.0%
4456195 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 65.0 7.02e-01 90.7% 96.7%
4646871 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 64.0 6.82e-01 90.0% 93.6%
5991 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 63.0 6.78e-01 91.4% 95.1%
3351103 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 66.0 6.73e-01 92.1% 89.6%
138072 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 66.0 6.84e-01 90.7% 92.4%
2588759 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 63.0 6.78e-01 90.0% 95.9%
4660283 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 64.0 6.82e-01 90.0% 95.2%
1290662 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 65.0 6.47e-01 90.0% 84.6%
5037345 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 66.0 6.78e-01 90.7% 92.5%
1082804 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.78 67.0 6.65e-01 90.7% 93.8%
5028024 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 63.0 6.54e-01 90.7% 90.8%
4057937 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 65.0 6.71e-01 91.4% 91.8%
3932752 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 64.0 6.74e-01 92.1% 96.8%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.77 63.0 6.57e-01 91.4% 92.3%
5039027 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 61.0 6.61e-01 90.7% 96.7%
3351110 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 62.0 6.69e-01 87.9% 98.3%
4026069 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 64.0 6.50e-01 88.6% 89.6%
4172290 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 67.0 6.91e-01 99.3% 99.2%
2834340 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.76 70.0 7.03e-01 97.1% 97.1%
3936915 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 65.0 6.76e-01 96.4% 97.7%
4466445 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 65.0 6.28e-01 90.7% 93.5%
4030418 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 64.0 6.40e-01 88.6% 92.1%
3238130 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 66.0 6.57e-01 96.4% 91.7%
3623607 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 67.0 6.73e-01 96.4% 96.4%
3788095 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 65.0 6.65e-01 99.3% 98.5%
5039218 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 63.0 6.56e-01 92.1% 98.5%
3478975 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 63.0 6.49e-01 98.6% 96.3%
4027851 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 64.0 6.38e-01 94.3% 98.6%
3743107 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.72 64.0 6.41e-01 94.3% 98.6%
3599554 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 65.0 6.35e-01 97.1% 98.7%
3251868 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 62.0 6.29e-01 94.3% 98.6%
3789624 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.70 63.0 6.37e-01 95.7% 98.6%
3610047 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.70 64.0 6.10e-01 96.4% 96.9%
3210421 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.70 63.0 6.07e-01 96.4% 98.1%
3193266 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.69 63.0 6.21e-01 97.1% 98.6%
3742859 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 23.0 3.50e-01 72.1% 78.3%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 27.0 3.49e-01 90.0% 78.7%
4354418 9.1.1.16 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 45.0 2.82e-01 86.4% 40.1%
4288802 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.52 36.0 3.54e-01 92.1% 63.9%
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.52 29.0 3.10e-01 80.7% 59.2%
3553623 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.50 37.0 3.87e-01 75.7% 99.2%