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DNA_polymerase_processivity_subunit
Euk-VirEptesicus_fuscus_gammaherpesvirus
DNA_polymerase_processivity_subunit__YP_009552524__Eptesicus_fuscus_gammaherpesvirus__2035399
Identity
- Accession:
- YP_009552524 ↗
- Protein ID:
- DNA_polymerase_processivity_subunit
- Kingdom:
- euk
Quality
69.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Eptesicus_fuscus_gammaherpesvirus
TaxID: 2035399
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-147
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04929.18 best | Herpes_DNAp_acc | 124.6 | 7.10e-36 | 98.5% | 34.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.95 | 88.0 | 6.62e-01 | 100.0% | 45.6% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.90 | 86.0 | 6.44e-01 | 100.0% | 48.0% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.85 | 71.0 | 5.69e-01 | 99.3% | 47.8% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.71 | 56.0 | 4.61e-01 | 97.1% | 46.5% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.71 | 55.0 | 5.87e-01 | 100.0% | 95.0% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 56.0 | 5.90e-01 | 100.0% | 95.8% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 55.0 | 5.84e-01 | 100.0% | 95.0% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.69 | 55.0 | 4.86e-01 | 100.0% | 58.3% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 53.0 | 5.68e-01 | 100.0% | 95.0% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 53.0 | 4.72e-01 | 99.3% | 58.5% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 27.0 | 3.53e-01 | 86.1% | 70.3% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 36.0 | 3.25e-01 | 100.0% | 48.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1178585 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.95 | 88.0 | 8.76e-01 | 100.0% | 92.9% |
| 1082803 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.90 | 86.0 | 8.25e-01 | 100.0% | 93.5% |
| 1924009 | 227.1.1.10 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP | 0.85 | 71.0 | 7.27e-01 | 99.3% | 90.2% |
| 3397928 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.75 | 62.0 | 6.50e-01 | 97.8% | 96.0% |
| 3932752 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 60.0 | 6.30e-01 | 100.0% | 95.2% |
| 3728061 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.73 | 60.0 | 6.15e-01 | 100.0% | 90.2% |
| 3624709 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.73 | 60.0 | 6.16e-01 | 100.0% | 92.3% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.73 | 61.0 | 6.32e-01 | 100.0% | 96.8% |
| 3873544 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.72 | 60.0 | 6.15e-01 | 100.0% | 91.0% |
| 4650779 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.72 | 57.0 | 5.99e-01 | 100.0% | 92.0% |
| 3478975 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 59.0 | 6.02e-01 | 97.8% | 88.9% |
| 3407531 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 59.0 | 5.97e-01 | 100.0% | 88.9% |
| 4437554 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.71 | 56.0 | 5.88e-01 | 100.0% | 92.0% |
| 4995744 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.71 | 55.0 | 5.79e-01 | 100.0% | 91.1% |
| 3936914 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.70 | 59.0 | 6.03e-01 | 100.0% | 93.8% |
| 4500973 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.70 | 56.0 | 5.86e-01 | 100.0% | 93.5% |
| 4508401 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.70 | 56.0 | 5.90e-01 | 100.0% | 93.6% |
| 2834340 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.70 | 61.0 | 6.08e-01 | 99.3% | 91.4% |
| 4542774 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.70 | 56.0 | 5.90e-01 | 100.0% | 95.8% |
| 3625038 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 61.0 | 6.07e-01 | 98.5% | 91.4% |
| 3478160 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 58.0 | 6.00e-01 | 100.0% | 95.3% |
| 3789624 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.70 | 61.0 | 6.06e-01 | 98.5% | 91.4% |
| 4360456 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.69 | 56.0 | 5.71e-01 | 100.0% | 89.2% |
| 4336156 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.69 | 56.0 | 5.91e-01 | 100.0% | 97.5% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.69 | 53.0 | 5.60e-01 | 100.0% | 91.1% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.69 | 63.0 | 6.02e-01 | 99.3% | 93.5% |
| 3785352 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.68 | 62.0 | 5.86e-01 | 99.3% | 89.7% |
| 4608521 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.68 | 62.0 | 5.47e-01 | 99.3% | 75.5% |
| 3223650 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.68 | 61.0 | 5.98e-01 | 100.0% | 90.3% |
| 3480669 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.68 | 61.0 | 6.02e-01 | 98.5% | 92.3% |
| 4948943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.68 | 30.0 | 3.96e-01 | 99.3% | 74.4% |
| 3788671 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.67 | 62.0 | 5.85e-01 | 100.0% | 93.3% |
| 3719938 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.67 | 59.0 | 5.92e-01 | 100.0% | 93.6% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.67 | 61.0 | 5.90e-01 | 98.5% | 90.7% |
| 3406311 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.67 | 60.0 | 5.82e-01 | 98.5% | 89.7% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.66 | 61.0 | 5.83e-01 | 100.0% | 98.7% |
| 3598259 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.65 | 55.0 | 5.61e-01 | 97.1% | 92.6% |
| 3962048 | 227.1.1.15 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 | 0.65 | 43.0 | 4.92e-01 | 99.3% | 92.0% |
| 4027851 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.65 | 58.0 | 5.75e-01 | 98.5% | 93.8% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.64 | 58.0 | 5.76e-01 | 100.0% | 97.2% |
| 3915668 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.63 | 26.0 | 3.21e-01 | 80.3% | 58.9% |
| 3970166 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.62 | 27.0 | 3.13e-01 | 80.3% | 54.0% |
| 1178584 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.62 | 57.0 | 5.58e-01 | 100.0% | 95.9% |
| 4087213 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.60 | 26.0 | 3.49e-01 | 97.8% | 74.7% |
| 3712697 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 39.0 | 3.85e-01 | 80.3% | 80.7% |
| 5067760 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.51 | 27.0 | 3.33e-01 | 83.2% | 78.9% |
| 5002658 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 32.0 | 2.95e-01 | 100.0% | 47.0% |
D2
high
residues 164-310
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04929.18 best | Herpes_DNAp_acc | 103.3 | 2.20e-29 | 98.6% | 34.2% |