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DNA_polymerase_processivity_subunit
Euk-VirBubaline_alphaherpesvirus_1
DNA_polymerase_processivity_subunit__YP_009664637__Bubaline_alphaherpesvirus_1__202910
Identity
- Accession:
- YP_009664637 ↗
- Protein ID:
- DNA_polymerase_processivity_subunit
- Kingdom:
- euk
Quality
71.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Bubaline_alphaherpesvirus_1
TaxID: 202910
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-160
Domain cluster:
rep: DNA_polymerase_processivity_subunit__YP_009342361__Spheniscid_alphaherpesvirus_1__2560777__D21-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02282.22 best | Herpes_UL42 | 54.4 | 1.90e-14 | 97.7% | 72.7% |
D2
high
residues 176-229_253-325
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.89 | 80.0 | 6.03e-01 | 100.0% | 44.6% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.85 | 74.0 | 5.74e-01 | 99.2% | 46.2% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 65.0 | 5.33e-01 | 96.1% | 48.4% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 75.0 | 5.51e-01 | 100.0% | 45.6% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 74.0 | 5.52e-01 | 99.2% | 47.7% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 68.0 | 5.33e-01 | 100.0% | 46.6% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 70.0 | 5.40e-01 | 100.0% | 46.9% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 66.0 | 5.19e-01 | 100.0% | 47.1% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 66.0 | 5.18e-01 | 100.0% | 46.7% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 64.0 | 5.08e-01 | 100.0% | 47.3% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 61.0 | 4.90e-01 | 100.0% | 48.7% |
| 4gakA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 41.0 | 3.29e-01 | 100.0% | 36.0% |
| 1c8uA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 39.0 | 4.11e-01 | 100.0% | 77.4% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 40.0 | 3.90e-01 | 89.8% | 65.5% |
| 1sbkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 41.0 | 4.00e-01 | 100.0% | 71.5% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 41.0 | 4.22e-01 | 100.0% | 81.8% |
| 4kc5C03 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.54 | 45.0 | 3.50e-01 | 92.9% | 79.2% |
| 3lw3B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 38.0 | 3.79e-01 | 100.0% | 68.6% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.53 | 39.0 | 3.79e-01 | 83.5% | 68.3% |
| 5bp3B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 45.0 | 3.52e-01 | 94.5% | 95.7% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 25.0 | 3.06e-01 | 89.8% | 71.6% |
| 4mf9B01 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.52 | 32.0 | 2.93e-01 | 100.0% | 46.1% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 41.0 | 4.10e-01 | 100.0% | 80.3% |
| 2pimA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 39.0 | 3.91e-01 | 79.5% | 100.0% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 3.86e-01 | 100.0% | 78.4% |
| 3bbjA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.51 | 43.0 | 3.48e-01 | 94.5% | 98.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 71028 | 227.1.1.5 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_UL42 | 0.87 | 81.0 | 8.01e-01 | 100.0% | 94.7% |
| 1924008 | 227.1.1.10 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP | 0.84 | 73.0 | 7.35e-01 | 100.0% | 90.6% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 71.0 | 6.58e-01 | 100.0% | 77.3% |
| 1082804 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.79 | 75.0 | 7.10e-01 | 100.0% | 93.2% |
| 4055466 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 69.0 | 7.03e-01 | 100.0% | 95.2% |
| 4057937 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.78 | 70.0 | 6.87e-01 | 100.0% | 89.6% |
| 5052551 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 66.0 | 6.73e-01 | 100.0% | 92.8% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.77 | 70.0 | 6.87e-01 | 100.0% | 91.7% |
| 5056758 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.76 | 62.0 | 6.54e-01 | 97.6% | 94.8% |
| 3810053 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 71.0 | 6.61e-01 | 100.0% | 92.3% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.75 | 68.0 | 6.89e-01 | 100.0% | 96.8% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.75 | 69.0 | 6.83e-01 | 100.0% | 93.3% |
| 3406312 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.74 | 65.0 | 6.64e-01 | 100.0% | 96.7% |
| 4030418 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.74 | 69.0 | 6.64e-01 | 99.2% | 92.1% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.73 | 69.0 | 6.65e-01 | 100.0% | 95.0% |
| 3760926 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.72 | 66.0 | 6.43e-01 | 100.0% | 89.9% |
| 2392884 | 227.1.1.14 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C | 0.72 | 60.0 | 6.19e-01 | 100.0% | 92.5% |
| 3406311 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.72 | 67.0 | 6.24e-01 | 100.0% | 90.3% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.72 | 63.0 | 6.41e-01 | 99.2% | 95.2% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.69 | 64.0 | 6.03e-01 | 100.0% | 90.7% |
| 3579466 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.67 | 32.0 | 4.43e-01 | 78.0% | 100.0% |
| 3507499 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.65 | 60.0 | 5.88e-01 | 99.2% | 95.6% |
| 3931156 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 25.0 | 3.31e-01 | 95.3% | 64.3% |
| 2996027 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.59 | 41.0 | 3.89e-01 | 100.0% | 60.5% |
| 1108129 | 222.1.1.18 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › RhiE_B | 0.55 | 42.0 | 4.11e-01 | 100.0% | 73.6% |
| 4033783 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.54 | 41.0 | 4.16e-01 | 100.0% | 79.8% |
| 4175134 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.54 | 40.0 | 3.75e-01 | 100.0% | 63.2% |
| 4021085 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.53 | 39.0 | 3.67e-01 | 78.7% | 82.4% |
| 3248912 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 39.0 | 3.62e-01 | 78.0% | 78.2% |
| 4228020 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.51 | 38.0 | 3.48e-01 | 78.0% | 77.6% |
| 4627197 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.51 | 38.0 | 3.52e-01 | 78.7% | 78.2% |
| 4420797 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 27.0 | 3.13e-01 | 89.8% | 71.8% |
| 1063623 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 46.0 | 4.50e-01 | 100.0% | 97.1% |