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DNA_polymerase_processivity_subunit

Euk-Vir

Wood_mouse_herpesvirus

DNA_polymerase_processivity_subunit__YP_010085933__Wood_mouse_herpesvirus__432370

Identity

Accession:
YP_010085933 ↗
Protein ID:
DNA_polymerase_processivity_subunit
Kingdom:
euk

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Wood_mouse_herpesvirus

TaxID: 432370

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-132
PDB
Domain cluster: rep: SRR1747052_scaffold_2_prodigal-single.1__X__X__00025__D169-297
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04929.18 best Herpes_DNAp_acc 65.7 5.90e-18 100.0% 34.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.92 87.0 6.44e-01 100.0% 44.6%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 82.0 6.08e-01 100.0% 47.0%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 67.0 5.25e-01 100.0% 49.1%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 56.0 5.88e-01 100.0% 93.3%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 55.0 4.85e-01 100.0% 57.5%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.69 64.0 5.74e-01 100.0% 74.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 57.0 5.78e-01 100.0% 90.0%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 56.0 5.68e-01 100.0% 94.4%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 60.0 4.69e-01 100.0% 49.4%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.63 44.0 4.65e-01 81.7% 82.3%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 41.0 3.28e-01 100.0% 36.6%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 27.0 3.63e-01 72.5% 100.0%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 42.0 3.35e-01 87.0% 87.7%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 3.68e-01 100.0% 67.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1178585 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.92 87.0 8.42e-01 100.0% 90.8%
1082803 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.86 82.0 7.72e-01 100.0% 91.5%
4995744 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 57.0 5.90e-01 100.0% 88.6%
3932752 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 60.0 6.16e-01 100.0% 94.4%
4024730 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 46.0 5.54e-01 71.8% 100.0%
4650779 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.71 59.0 6.01e-01 100.0% 92.0%
2834340 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.70 62.0 6.12e-01 100.0% 89.9%
4508401 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.70 57.0 5.86e-01 100.0% 91.2%
3873544 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 60.0 5.96e-01 100.0% 89.6%
3719938 227.1.1.17 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.70 63.0 6.16e-01 100.0% 92.1%
4500973 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.69 56.0 5.78e-01 100.0% 91.9%
3787700 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.69 63.0 5.99e-01 100.0% 96.8%
4542774 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.68 56.0 5.83e-01 100.0% 95.8%
3788671 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.68 63.0 5.79e-01 100.0% 91.5%
3407530 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.68 58.0 5.83e-01 100.0% 89.6%
4466445 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.68 62.0 5.90e-01 100.0% 90.3%
4360456 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.68 56.0 5.67e-01 100.0% 90.0%
3478160 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.67 57.0 5.83e-01 100.0% 94.5%
3598259 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.67 59.0 5.87e-01 99.2% 92.6%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.67 61.0 5.86e-01 100.0% 90.7%
3406311 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.66 60.0 5.72e-01 100.0% 89.0%
3722115 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.66 60.0 5.77e-01 100.0% 92.7%
4027851 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.65 58.0 5.67e-01 100.0% 92.4%
3599554 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 59.0 5.63e-01 100.0% 92.0%
3560129 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 38.0 3.96e-01 81.7% 67.2%
3212496 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 37.0 4.35e-01 97.7% 94.4%
3964752 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.55 39.0 3.67e-01 100.0% 60.1%
3495405 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.52 33.0 3.15e-01 97.7% 56.0%
3056890 54.1.1.3 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › VP40 0.51 41.0 3.95e-01 100.0% 74.5%
3290151 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.51 35.0 3.63e-01 80.9% 74.4%
D2 high residues 146-284
PDB
Domain cluster: rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04929.18 best Herpes_DNAp_acc 119.9 2.00e-34 99.3% 32.8%