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DNA_polymerase_processivity_subunit
Euk-VirHuman_gammaherpesvirus_4
DNA_polymerase_processivity_subunit__YP_401657__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401657 ↗
- Protein ID:
- DNA_polymerase_processivity_subunit
- Kingdom:
- euk
Quality
76.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-146
Domain cluster:
rep: ORF59__YP_438183__Ovine_gammaherpesvirus_2__10398__D2-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04929.18 best | Herpes_DNAp_acc | 198.1 | 3.50e-58 | 98.6% | 35.0% |
D2
high
residues 159-299
Domain cluster:
rep: DNA_polymerase_processivity_subunit__YP_009054921__Equid_alphaherpesvirus_3__80341__D193-340
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04929.18 best | Herpes_DNAp_acc | 201.6 | 3.10e-59 | 100.0% | 35.0% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 1.00 | 99.0 | 7.31e-01 | 100.0% | 47.3% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.89 | 84.0 | 6.43e-01 | 98.6% | 50.2% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.84 | 69.0 | 5.58e-01 | 98.6% | 48.6% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.84 | 66.0 | 5.40e-01 | 99.3% | 47.3% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.83 | 63.0 | 5.33e-01 | 95.0% | 49.8% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.83 | 68.0 | 5.49e-01 | 99.3% | 48.2% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 66.0 | 5.38e-01 | 100.0% | 49.0% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.81 | 68.0 | 7.11e-01 | 99.3% | 96.9% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 65.0 | 5.35e-01 | 98.6% | 49.6% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 65.0 | 5.35e-01 | 100.0% | 49.6% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 68.0 | 5.43e-01 | 100.0% | 48.8% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 65.0 | 5.34e-01 | 99.3% | 50.4% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 62.0 | 6.73e-01 | 100.0% | 97.5% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 66.0 | 5.30e-01 | 98.6% | 50.2% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 60.0 | 5.36e-01 | 100.0% | 60.1% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 63.0 | 5.02e-01 | 100.0% | 46.1% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 63.0 | 5.10e-01 | 99.3% | 49.0% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 59.0 | 6.16e-01 | 100.0% | 91.4% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.72 | 55.0 | 6.08e-01 | 97.2% | 100.0% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.71 | 56.0 | 5.22e-01 | 97.9% | 67.4% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.71 | 65.0 | 5.13e-01 | 99.3% | 50.9% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.70 | 54.0 | 4.58e-01 | 100.0% | 50.4% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.67 | 26.0 | 3.18e-01 | 79.4% | 51.1% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 25.0 | 3.41e-01 | 78.0% | 83.1% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.51 | 29.0 | 3.21e-01 | 95.0% | 67.8% |
| 2o3bB00 | 3.40.1460.10 | Alpha Beta › 3-Layer(aba) Sandwich › Nuia › Nuclease A inhibitor-like | 0.50 | 31.0 | 3.16e-01 | 99.3% | 62.2% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1082804 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 1.00 | 99.0 | 9.73e-01 | 100.0% | 96.6% |
| 1178584 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.89 | 84.0 | 8.36e-01 | 98.6% | 98.6% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.84 | 67.0 | 7.22e-01 | 99.3% | 96.7% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 70.0 | 6.76e-01 | 100.0% | 80.5% |
| 3719304 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.82 | 68.0 | 7.01e-01 | 98.6% | 90.3% |
| 4517015 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 67.0 | 7.17e-01 | 100.0% | 97.6% |
| 4456195 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.82 | 67.0 | 7.20e-01 | 100.0% | 100.0% |
| 4976500 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 67.0 | 7.09e-01 | 100.0% | 94.5% |
| 4055466 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 68.0 | 7.19e-01 | 100.0% | 98.4% |
| 5011281 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 67.0 | 7.06e-01 | 100.0% | 96.0% |
| 4991675 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 67.0 | 7.14e-01 | 100.0% | 97.6% |
| 4941929 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 67.0 | 7.01e-01 | 100.0% | 94.5% |
| 138072 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 69.0 | 7.14e-01 | 100.0% | 95.4% |
| 4943404 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.81 | 67.0 | 7.02e-01 | 98.6% | 93.8% |
| 5010672 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.81 | 66.0 | 7.10e-01 | 99.3% | 100.0% |
| 4936050 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 66.0 | 6.98e-01 | 99.3% | 96.8% |
| 4983064 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 66.0 | 7.00e-01 | 100.0% | 98.4% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 68.0 | 6.95e-01 | 98.6% | 92.6% |
| 5043507 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 65.0 | 7.04e-01 | 97.9% | 100.0% |
| 5051689 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 66.0 | 6.97e-01 | 100.0% | 97.6% |
| 5052551 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 65.0 | 6.84e-01 | 100.0% | 96.0% |
| 2588759 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 65.0 | 6.96e-01 | 99.3% | 99.2% |
| 5991 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 64.0 | 6.83e-01 | 100.0% | 97.5% |
| 3738030 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.79 | 68.0 | 6.93e-01 | 98.6% | 94.1% |
| 5028024 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 65.0 | 6.72e-01 | 100.0% | 93.1% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 65.0 | 6.80e-01 | 97.9% | 94.6% |
| 5027067 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 64.0 | 6.93e-01 | 97.9% | 100.0% |
| 3351103 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 65.0 | 6.69e-01 | 100.0% | 91.1% |
| 4660283 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 65.0 | 6.88e-01 | 100.0% | 98.4% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 67.0 | 6.88e-01 | 100.0% | 94.7% |
| 5000468 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 66.0 | 6.98e-01 | 100.0% | 100.0% |
| 3015239 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.78 | 61.0 | 6.64e-01 | 100.0% | 96.6% |
| 2392242 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.78 | 58.0 | 6.50e-01 | 99.3% | 96.5% |
| 4939066 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 65.0 | 6.75e-01 | 100.0% | 95.3% |
| 4013292 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.78 | 68.0 | 6.97e-01 | 99.3% | 96.3% |
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.77 | 61.0 | 6.51e-01 | 95.7% | 93.6% |
| 4025727 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.77 | 67.0 | 6.78e-01 | 97.9% | 92.1% |
| 5039027 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.77 | 62.0 | 6.66e-01 | 100.0% | 99.2% |
| 3346536 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.76 | 68.0 | 6.74e-01 | 99.3% | 90.3% |
| 3351110 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 62.0 | 6.67e-01 | 96.5% | 100.0% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 62.0 | 6.53e-01 | 98.6% | 98.4% |
| 4057937 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.75 | 65.0 | 6.70e-01 | 100.0% | 96.3% |
| 3782606 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.74 | 66.0 | 6.61e-01 | 100.0% | 93.1% |
| 3238130 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.73 | 64.0 | 6.40e-01 | 100.0% | 90.3% |
| 3789625 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 64.0 | 6.54e-01 | 98.6% | 97.0% |
| 3081033 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 60.0 | 6.29e-01 | 86.5% | 98.4% |
| 2392884 | 227.1.1.14 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C | 0.71 | 55.0 | 5.92e-01 | 99.3% | 94.2% |
| 4426056 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.71 | 66.0 | 6.35e-01 | 100.0% | 89.0% |
| 4380331 | 295.1.1.27 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 | 0.71 | 27.0 | 3.88e-01 | 99.3% | 72.9% |
| 3743106 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 65.0 | 6.49e-01 | 98.6% | 96.6% |
| 3507499 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 63.0 | 6.46e-01 | 98.6% | 98.5% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 64.0 | 6.40e-01 | 98.6% | 97.9% |
| 3406311 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.69 | 65.0 | 6.27e-01 | 99.3% | 91.6% |
| 3734891 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.69 | 64.0 | 6.31e-01 | 98.6% | 97.3% |
| 4983767 | 218.4.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain | 0.62 | 32.0 | 3.99e-01 | 76.6% | 78.9% |
| 4353811 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 28.0 | 3.88e-01 | 80.9% | 97.1% |
| 4310351 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 29.0 | 3.94e-01 | 78.7% | 100.0% |
| 5066808 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 32.0 | 3.39e-01 | 90.8% | 65.9% |
| 3839028 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 25.0 | 3.52e-01 | 85.1% | 100.0% |
| 3386763 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 24.0 | 3.39e-01 | 84.4% | 96.9% |