←Back to structures

DNA_primase_helicase,_phage-associated

Euk-Vir

Kaumoebavirus_Viruses.

DNA_primase_helicase,_phage-associated__YP_009352545__Kaumoebavirus_Viruses.__X

Identity

Accession:
YP_009352545 ↗
Protein ID:
DNA_primase_helicase,_phage-associated
Kingdom:
euk

Quality

69.2 mean pLDDT

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-84
PDB
D2 high residues 448-611
PDB
Domain cluster: rep: VV_D5-like_helicase__YP_009000916__Pithovirus_sibericum__1450746__D372-558
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 32.0 4.24e-01 78.7% 72.2%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 33.0 4.99e-01 82.9% 97.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 31.0 4.43e-01 77.4% 88.0%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 40.0 4.64e-01 87.2% 86.3%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.61 35.0 3.20e-01 84.8% 42.0%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.61 40.0 4.13e-01 84.1% 69.2%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 35.0 4.22e-01 79.3% 88.2%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 32.0 4.44e-01 75.6% 100.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 29.0 3.52e-01 96.3% 73.3%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 29.0 3.52e-01 86.0% 72.6%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.57 30.0 4.11e-01 76.8% 97.7%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 36.0 3.92e-01 78.7% 74.1%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 20.0 3.09e-01 87.2% 80.3%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.56 25.0 3.30e-01 95.7% 76.7%
4xt1A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 40.0 3.34e-01 79.9% 72.9%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.51 38.0 3.99e-01 76.8% 87.6%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.51 32.0 3.55e-01 81.1% 78.0%
2i10B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 33.0 3.72e-01 90.9% 84.8%
1xioA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 37.0 3.34e-01 81.7% 55.8%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.50 34.0 3.81e-01 87.8% 88.7%
2c0gA02 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.50 26.0 3.18e-01 93.3% 76.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4977808 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.78 32.0 5.01e-01 79.3% 92.9%
4983638 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.77 29.0 4.44e-01 75.0% 82.6%
4023439 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.77 31.0 4.78e-01 79.9% 90.0%
3724761 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 31.0 4.74e-01 79.3% 90.0%
5048081 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 31.0 4.67e-01 78.0% 86.7%
4933335 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.74 31.0 4.51e-01 78.7% 82.5%
4034237 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.74 37.0 4.38e-01 70.7% 68.7%
4972182 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.74 31.0 4.71e-01 78.7% 92.9%
5070891 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 30.0 4.27e-01 74.4% 78.8%
4947260 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 31.0 4.47e-01 79.3% 83.7%
3418094 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 31.0 4.48e-01 79.3% 85.0%
5076876 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 31.0 4.44e-01 79.9% 85.0%
3773235 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 30.0 4.03e-01 76.8% 72.2%
4941690 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.69 40.0 3.83e-01 79.3% 47.9%
4992256 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 38.0 4.82e-01 79.9% 88.9%
5059064 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.69 33.0 4.51e-01 75.0% 88.2%
5067364 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.69 40.0 3.70e-01 78.7% 44.9%
3237761 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 37.0 4.76e-01 79.3% 89.0%
3937243 604.1.1.139 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7799 0.64 39.0 4.11e-01 80.5% 66.9%
5012672 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 35.0 4.68e-01 82.3% 98.9%
3641813 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.64 32.0 4.13e-01 75.6% 83.2%
3809724 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 38.0 4.14e-01 79.9% 70.0%
3512636 3930.1.1.6 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD 0.62 32.0 3.81e-01 80.5% 71.3%
3298600 174.1.1.45 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › MENTAL 0.61 39.0 4.11e-01 82.9% 69.3%
2060764 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 40.0 4.47e-01 84.1% 86.7%
3484828 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 37.0 3.81e-01 76.8% 65.2%
4054419 604.12.1.78 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FUSC 0.55 34.0 3.39e-01 82.9% 59.4%
3479515 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 33.0 3.76e-01 79.9% 79.2%
3661619 192.18.1.0 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.50 33.0 3.02e-01 99.4% 48.4%
3516123 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.50 38.0 4.16e-01 84.8% 92.9%
D3 high residues 658-902
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 57.0 6.17e-01 96.3% 94.7%
1r6bX04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 47.0 5.21e-01 70.6% 95.9%
3nbxX01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 52.0 5.56e-01 93.9% 97.1%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 55.0 5.24e-01 99.2% 97.6%
2mr5A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 33.0 4.25e-01 81.2% 100.0%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 4.55e-01 92.7% 88.8%
1wp9A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 32.0 3.97e-01 94.7% 94.0%
1ep3B02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 23.0 3.18e-01 93.1% 78.6%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 4.25e-01 86.1% 94.6%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 30.0 3.77e-01 77.1% 100.0%
3crmA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 29.0 3.58e-01 87.3% 89.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954608 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.93 82.0 8.02e-01 100.0% 85.0%
4973289 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.91 82.0 7.95e-01 99.2% 84.9%
4959586 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.89 79.0 7.52e-01 100.0% 80.6%
5081314 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 76.0 7.44e-01 100.0% 84.2%
5029777 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.87 76.0 7.48e-01 100.0% 86.3%
5035042 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.86 80.0 7.69e-01 100.0% 86.2%
5022020 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.86 78.0 7.55e-01 100.0% 86.4%
5003620 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.85 73.0 6.41e-01 100.0% 63.9%
3945876 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.82 72.0 6.99e-01 100.0% 83.8%
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.82 64.0 7.13e-01 89.8% 100.0%
5011495 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 57.0 6.33e-01 98.8% 91.0%
3510197 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 47.0 3.67e-01 75.1% 35.2%
3952423 2004.1.1.339 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF3631 0.65 59.0 5.78e-01 97.1% 96.2%
5000866 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.64 55.0 5.71e-01 92.2% 96.5%
4443044 2004.1.1.1014 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 0.64 59.0 5.45e-01 98.4% 94.5%
4937763 2004.1.1.155 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3 0.63 52.0 5.41e-01 92.7% 93.3%
None — 0.62 52.0 5.50e-01 91.8% 100.0%
4941848 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 55.0 4.77e-01 97.6% 82.7%
3839744 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 52.0 5.13e-01 92.2% 85.7%
4182861 2004.1.1.123 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD 0.57 41.0 4.36e-01 72.7% 86.5%
4934060 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 45.0 3.57e-01 84.1% 54.8%
4987289 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 46.0 3.65e-01 87.3% 56.3%
3256042 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.55 43.0 4.03e-01 80.0% 88.8%
3163557 2004.1.1.123 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD 0.54 38.0 4.36e-01 95.5% 94.1%
3599996 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 39.0 4.34e-01 71.8% 95.7%
4971131 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 45.0 3.54e-01 87.3% 55.7%
5053147 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 45.0 3.51e-01 86.5% 54.1%
4964086 2004.1.1.1218 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PilB3_C 0.53 44.0 3.51e-01 86.5% 54.8%
4969126 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 3.43e-01 87.8% 51.8%
4979424 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.53 41.0 4.39e-01 88.2% 93.0%
5025795 2007.6.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 31.0 3.66e-01 82.0% 82.4%
4956405 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 41.0 3.42e-01 81.6% 48.6%
4926967 2007.6.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.50 28.0 3.45e-01 87.3% 86.9%
D4 medium residues 89-256
PDB
Domain cluster: rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23162.2 best AEP_C962R 49.2 1.00e-12 89.3% 75.1%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6mA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.69 42.0 4.71e-01 76.8% 77.7%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.68 38.0 4.29e-01 76.8% 68.9%
2f5gA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.67 40.0 4.53e-01 76.8% 76.2%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 38.0 4.85e-01 75.6% 98.9%
7c51A01 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.65 42.0 5.04e-01 76.2% 98.2%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 39.0 4.72e-01 76.2% 95.1%
4c8yA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 41.0 4.94e-01 76.2% 100.0%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.62e-01 76.2% 94.1%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 39.0 4.74e-01 76.2% 100.0%
1ivzA00 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.63 45.0 5.00e-01 79.8% 93.2%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 4.80e-01 76.2% 100.0%
3ka7A02 3.90.660.50 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.62 38.0 3.58e-01 76.8% 49.0%
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.61 27.0 3.64e-01 76.2% 78.8%
2b7nA01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.60 36.0 4.11e-01 76.2% 78.0%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 34.0 3.98e-01 97.0% 78.6%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.62e-01 89.9% 100.0%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.59 39.0 4.57e-01 76.8% 98.2%
3dkxA01 3.40.1310.30 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 42.0 4.65e-01 98.2% 92.5%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 34.0 3.98e-01 99.4% 80.0%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.58 47.0 4.92e-01 85.1% 99.3%
4er8A00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.58 44.0 4.50e-01 100.0% 81.2%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.49e-01 75.6% 100.0%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 4.54e-01 75.0% 100.0%
4n77A00 3.30.70.2660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 51.0 4.89e-01 97.6% 91.8%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.49e-01 75.6% 100.0%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.49e-01 76.2% 98.3%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 4.32e-01 75.6% 99.1%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 4.63e-01 76.2% 99.2%
3gnnA01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.56 35.0 3.81e-01 76.8% 75.4%
5huoE01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.55 35.0 3.87e-01 77.4% 77.0%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 25.0 3.18e-01 75.0% 70.3%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 4.26e-01 76.2% 99.1%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 4.15e-01 79.2% 100.0%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 35.0 4.15e-01 76.2% 99.1%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.53 43.0 4.35e-01 97.6% 85.1%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 31.0 3.49e-01 99.4% 74.8%
3vzhA00 3.30.70.2660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 46.0 4.42e-01 99.4% 95.4%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.50 41.0 4.11e-01 98.8% 83.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626314 862.1.1.11 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R 0.70 59.0 5.09e-01 100.0% 59.6%
4613758 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.67 41.0 4.99e-01 71.4% 93.6%
3604620 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 40.0 4.96e-01 76.2% 98.0%
3739994 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.65 41.0 4.91e-01 76.2% 99.0%
3540649 11.1.1.789 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 0.65 44.0 5.08e-01 74.4% 96.7%
3715696 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.64 59.0 4.90e-01 99.4% 61.5%
3210385 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 43.0 4.86e-01 77.4% 92.2%
5029744 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.62 39.0 4.61e-01 76.8% 91.3%
5077057 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.61 40.0 4.78e-01 75.0% 100.0%
4091380 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.61 39.0 4.72e-01 76.2% 99.1%
4927440 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.61 36.0 4.50e-01 74.4% 98.0%
4936511 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.61 39.0 4.65e-01 76.2% 98.2%
3282303 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.60 39.0 3.45e-01 75.0% 43.2%
3727497 304.4.1.11 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.60 42.0 4.86e-01 76.8% 100.0%
3700802 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.60 48.0 5.09e-01 85.7% 97.2%
3971017 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.60 36.0 4.28e-01 76.8% 90.0%
5014271 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.59 41.0 4.70e-01 76.2% 97.5%
2755644 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.59 37.0 4.07e-01 76.2% 75.0%
3463183 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.59 41.0 4.73e-01 76.2% 99.2%
4970098 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 31.0 3.70e-01 99.4% 74.5%
1168087 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 35.0 4.16e-01 76.2% 88.1%
4992378 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.59 38.0 4.35e-01 76.2% 89.2%
5000076 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.59 40.0 4.68e-01 75.0% 100.0%
3523342 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.59 45.0 4.41e-01 79.2% 74.4%
3613691 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 40.0 4.63e-01 76.8% 97.5%
2981335 304.55.1.3 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_OBD 0.59 42.0 4.67e-01 98.2% 93.9%
3280291 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.59 38.0 4.29e-01 76.8% 84.6%
3923333 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 34.0 3.83e-01 98.8% 73.1%
3941935 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 30.0 3.48e-01 99.4% 67.8%
4929310 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.59 38.0 4.49e-01 76.8% 98.2%
3609026 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.58 46.0 4.92e-01 86.3% 96.6%
4971865 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.58 40.0 4.63e-01 76.2% 98.3%
4078508 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 30.0 3.54e-01 98.8% 70.4%
3595511 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.58 48.0 5.01e-01 98.2% 96.1%
3717459 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.58 35.0 3.10e-01 83.3% 39.0%
4327417 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 30.0 3.56e-01 99.4% 71.3%
4278077 304.158.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 0.58 53.0 4.34e-01 98.2% 99.3%
4965450 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.58 37.0 4.36e-01 76.2% 96.4%
4048379 304.55.1.24 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › DUF1424 0.57 52.0 4.88e-01 98.2% 88.8%
3418391 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 34.0 3.85e-01 99.4% 76.8%
3414649 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 34.0 3.77e-01 99.4% 71.9%
3211244 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 34.0 3.79e-01 99.4% 74.6%
4085698 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 29.0 3.44e-01 99.4% 68.9%
3824144 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.57 39.0 4.49e-01 76.2% 98.3%
3795936 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.57 41.0 4.15e-01 75.0% 86.5%
3595555 317.1.1.0 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.56 41.0 3.71e-01 80.4% 55.1%
3404185 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 41.0 3.89e-01 75.6% 98.0%
4028174 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.56 34.0 3.74e-01 99.4% 74.1%
4874628 304.158.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 0.56 51.0 4.44e-01 98.2% 99.2%
4490981 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 28.0 3.37e-01 97.6% 70.9%
4271892 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 29.0 3.33e-01 99.4% 65.6%
5013543 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.55 36.0 4.23e-01 76.2% 95.7%
2593092 304.158.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 0.55 50.0 4.08e-01 97.6% 97.4%
3818973 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 34.0 3.75e-01 99.4% 76.2%
1916090 304.45.1.1 ↗ a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.55 43.0 4.58e-01 86.3% 93.8%
4281749 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 30.0 3.47e-01 99.4% 71.7%
3721393 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 38.0 4.28e-01 76.8% 95.2%
3613662 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 42.0 3.34e-01 81.0% 56.6%
4999233 304.21.1.1 ↗ a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR 0.54 39.0 3.87e-01 75.0% 70.3%
5083656 304.158.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.54 49.0 4.56e-01 99.4% 100.0%
3386672 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 36.0 4.16e-01 76.2% 96.5%
3937789 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 40.0 4.04e-01 75.0% 90.3%
3712842 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 36.0 3.57e-01 80.4% 65.6%
3253994 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 46.0 3.79e-01 100.0% 79.9%
3589587 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.50 45.0 4.26e-01 98.2% 85.5%
D5 medium residues 346-439
PDB
Domain cluster: rep: pC962R_1__YP_009703320__African_swine_fever_virus__10497__D1-93
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 31.7 2.20e-07 78.7% 76.6%