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DNA_repair_RAD2

Euk-Vir

Shrimp_hemocyte_iridescent_virus

DNA_repair_RAD2__YP_010084783__Shrimp_hemocyte_iridescent_virus__2039780

Identity

Accession:
YP_010084783 ↗
Protein ID:
DNA_repair_RAD2
Kingdom:
euk

Quality

84.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Shrimp_hemocyte_iridescent_virus

TaxID: 2039780

Cluster

View cluster (65 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-171
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.80 51.0 4.20e-01 100.0% 40.1%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 40.0 5.03e-01 100.0% 92.5%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 45.0 4.08e-01 100.0% 48.7%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 42.0 4.11e-01 100.0% 53.1%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.70 40.0 4.02e-01 100.0% 55.6%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.70 42.0 3.82e-01 100.0% 44.5%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 43.0 4.32e-01 100.0% 63.0%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 37.0 4.02e-01 93.2% 64.0%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 44.0 4.06e-01 100.0% 54.0%
3h1nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 44.0 3.91e-01 100.0% 50.8%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 40.0 3.92e-01 93.2% 57.1%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 40.0 3.23e-01 88.6% 33.3%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 47.0 4.43e-01 100.0% 64.2%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.62 37.0 3.36e-01 100.0% 43.7%
3jc6D01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 37.0 3.04e-01 100.0% 34.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.61 32.0 3.79e-01 84.1% 77.2%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.60 53.0 4.82e-01 96.6% 93.0%
6wlvB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 43.0 3.03e-01 73.9% 54.8%
2ce7B03 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.58 41.0 3.37e-01 75.0% 58.9%
4jgsD00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 50.0 5.10e-01 100.0% 95.3%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.56 49.0 4.30e-01 97.7% 93.1%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.55 34.0 3.41e-01 95.5% 60.0%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.54 44.0 3.84e-01 93.2% 80.1%
6a95A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 46.0 4.11e-01 96.6% 87.3%
2yveB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 40.0 3.21e-01 80.7% 75.0%
3fxhA00 1.20.120.600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall 0.51 44.0 4.02e-01 93.2% 97.3%
7f16R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 46.0 3.25e-01 100.0% 71.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306390 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.84 44.0 4.17e-01 100.0% 43.8%
3408508 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.79 47.0 4.98e-01 100.0% 66.3%
3739242 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.79 48.0 3.79e-01 100.0% 32.7%
3858699 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.77 42.0 3.99e-01 97.7% 48.0%
4878354 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.74 38.0 3.78e-01 100.0% 46.7%
3783943 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.74 40.0 4.03e-01 96.6% 53.3%
3558280 603.1.1.114 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 0.73 44.0 4.34e-01 100.0% 55.8%
2857735 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.72 37.0 3.60e-01 100.0% 44.3%
3619641 604.1.1.154 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27021 0.70 42.0 3.97e-01 100.0% 50.5%
3762669 4970.1.1.16 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › TMEM218_N 0.69 39.0 3.67e-01 100.0% 46.7%
4012049 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.68 48.0 4.22e-01 100.0% 51.2%
3515599 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.67 42.0 3.16e-01 100.0% 28.0%
3785572 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.65 47.0 4.53e-01 100.0% 66.0%
3173506 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 45.0 3.90e-01 97.7% 48.5%
4872781 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.64 40.0 3.67e-01 87.5% 47.4%
3787527 142.3.1.1 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.64 35.0 3.62e-01 96.6% 56.5%
3514794 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.64 40.0 3.62e-01 84.1% 46.7%
3295653 4268.2.1.0 ↗ alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA 0.63 44.0 3.93e-01 98.9% 53.3%
3206519 632.22.1.62 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › ATG17_like 0.61 51.0 3.86e-01 100.0% 39.5%
3664057 1203.1.2.4 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Vps55 0.61 47.0 4.03e-01 81.8% 64.5%
4994485 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.61 47.0 3.26e-01 84.1% 46.8%
5066847 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 36.0 3.65e-01 96.6% 57.8%
4027588 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 51.0 4.20e-01 100.0% 51.2%
3924411 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.60 43.0 3.53e-01 76.1% 78.1%
4233720 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.58 52.0 4.34e-01 100.0% 74.2%
3820045 603.1.1.118 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.58 35.0 3.64e-01 97.7% 63.5%
3630322 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 38.0 2.37e-01 100.0% 12.0%
4021233 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.56 47.0 3.08e-01 90.9% 32.7%
3189256 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.26e-01 89.8% 97.3%
3734200 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 38.0 3.86e-01 70.5% 91.8%
4945640 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.55 46.0 3.58e-01 89.8% 82.8%
4017247 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 36.0 2.82e-01 96.6% 32.1%
3176110 109.4.1.549 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAPS 0.52 39.0 2.37e-01 80.7% 29.8%
3581264 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 44.0 3.92e-01 90.9% 78.3%
3661727 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.51 45.0 3.35e-01 100.0% 40.0%
3275606 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.51 42.0 3.84e-01 90.9% 99.2%
3548834 109.4.1.470 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.51 39.0 3.18e-01 86.4% 68.1%
4929005 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.51 45.0 3.25e-01 97.7% 95.1%
4186195 1079.1.1.8 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.50 44.0 3.36e-01 97.7% 60.5%
3923557 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 47.0 3.51e-01 100.0% 61.0%
D2 medium residues 20-68_173-255
PDB
Domain cluster: rep: hypothetical_protein_MIV076L__YP_654648__Invertebrate_iridescent_virus_3__345201__D15-75_195-257
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00867.24 best XPG_I 40.7 3.40e-10 49.2% 78.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a76A01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.90 87.0 7.25e-01 100.0% 96.1%
5v07Z01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.89 84.0 7.08e-01 100.0% 94.7%
2j5vB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.71 59.0 4.87e-01 87.9% 93.9%
2va1B00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.70 60.0 4.93e-01 91.7% 100.0%
2bmuB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.70 56.0 4.71e-01 86.4% 100.0%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.70 58.0 5.44e-01 87.9% 83.6%
1o4wA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.63 47.0 4.84e-01 78.0% 92.8%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 44.0 4.49e-01 79.5% 99.2%
2gm3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 44.0 4.22e-01 79.5% 93.5%
3lp8A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 4.59e-01 83.3% 100.0%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 48.0 3.94e-01 88.6% 97.5%
1j09A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 40.0 4.20e-01 78.8% 99.2%
1ptmA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 45.0 3.44e-01 97.0% 90.2%
2y27B01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 38.0 2.86e-01 75.8% 42.2%
3khkA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.41e-01 97.0% 87.7%
2f48A01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.42e-01 93.2% 69.5%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 21.0 2.71e-01 96.2% 62.9%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946948 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.94 91.0 7.37e-01 100.0% 95.9%
4927168 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.94 90.0 7.36e-01 100.0% 95.9%
4933316 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.94 90.0 7.30e-01 100.0% 93.8%
5044998 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.93 90.0 7.50e-01 100.0% 95.6%
5072240 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.93 89.0 7.55e-01 100.0% 98.5%
3683988 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.93 90.0 7.37e-01 100.0% 93.9%
4395983 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.93 89.0 7.29e-01 100.0% 95.9%
4956546 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.93 89.0 7.35e-01 100.0% 95.8%
3882124 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.93 89.0 7.32e-01 100.0% 80.9%
4024047 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.93 89.0 7.14e-01 100.0% 93.5%
3789016 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.92 89.0 6.60e-01 100.0% 92.8%
4964944 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.92 89.0 7.37e-01 100.0% 94.8%
4021778 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.92 88.0 6.58e-01 100.0% 92.8%
5055638 2006.1.4.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N 0.92 89.0 7.35e-01 100.0% 95.2%
4237276 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.92 88.0 7.34e-01 100.0% 94.8%
3428426 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.92 88.0 7.41e-01 100.0% 93.7%
3875510 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.92 88.0 7.31e-01 100.0% 93.8%
3393840 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.92 88.0 7.06e-01 100.0% 95.2%
3238117 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.92 88.0 7.50e-01 100.0% 94.4%
142326 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 88.0 7.09e-01 100.0% 93.8%
3205760 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 88.0 6.76e-01 100.0% 95.0%
3641274 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 87.0 6.54e-01 99.2% 96.1%
3477276 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 87.0 6.94e-01 99.2% 95.3%
3484303 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.91 87.0 7.54e-01 100.0% 94.2%
4426402 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 87.0 7.11e-01 100.0% 92.3%
4264908 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 87.0 7.16e-01 100.0% 90.2%
3520565 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 87.0 6.93e-01 100.0% 94.5%
4589814 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.91 87.0 6.83e-01 100.0% 93.9%
None — 0.90 86.0 7.08e-01 100.0% 93.6%
3170744 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 6.41e-01 100.0% 66.8%
4028346 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 6.31e-01 100.0% 95.5%
3701288 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.90 86.0 7.05e-01 100.0% 93.6%
5049771 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.90 86.0 7.00e-01 100.0% 95.6%
3808902 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 7.55e-01 99.2% 93.9%
3610118 2006.1.4.46 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, XPG_I, XPG_I_2 0.90 86.0 6.47e-01 100.0% 72.2%
4377686 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.90 86.0 5.26e-01 100.0% 30.6%
4001799 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 6.65e-01 100.0% 74.9%
3627555 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 7.21e-01 100.0% 94.6%
4023084 2006.1.4.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N 0.90 86.0 6.63e-01 100.0% 77.7%
3472483 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 6.27e-01 100.0% 62.6%
3937112 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 85.0 6.62e-01 100.0% 75.7%
3718837 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.90 86.0 6.33e-01 100.0% 74.7%
4979225 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.90 85.0 7.20e-01 99.2% 98.5%
3335892 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 85.0 6.45e-01 100.0% 73.6%
4020826 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.89 85.0 6.64e-01 100.0% 77.3%
3823952 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 82.0 6.28e-01 95.5% 73.2%
3744314 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 85.0 6.45e-01 100.0% 71.6%
4028970 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.89 85.0 6.53e-01 100.0% 76.8%
3721945 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.88 85.0 7.39e-01 100.0% 96.2%
3743690 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.88 84.0 7.53e-01 100.0% 90.9%
3638602 2006.1.4.32 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N 0.88 84.0 6.27e-01 100.0% 67.5%
3599611 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.88 84.0 6.31e-01 100.0% 75.4%
3913336 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.88 83.0 7.27e-01 99.2% 92.4%
3937732 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.88 84.0 7.27e-01 100.0% 94.2%
3182237 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.88 84.0 7.11e-01 100.0% 95.0%
3607366 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.88 83.0 6.19e-01 100.0% 70.3%
3272525 2006.1.4.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N 0.88 84.0 6.51e-01 100.0% 76.1%
3874759 2006.1.4.35 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27242 0.88 83.0 6.03e-01 100.0% 61.5%
3755557 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.87 83.0 6.62e-01 100.0% 83.3%
3784928 2006.1.4.32 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N 0.87 83.0 6.56e-01 100.0% 75.9%
4028436 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.87 83.0 6.47e-01 100.0% 75.3%
3938152 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.87 82.0 6.89e-01 99.2% 94.6%
3919202 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.86 81.0 5.66e-01 99.2% 52.6%
3781390 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.86 81.0 6.74e-01 99.2% 94.4%
3223707 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.86 81.0 6.51e-01 100.0% 94.2%
3613309 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.85 81.0 6.61e-01 100.0% 93.3%
3176999 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.85 81.0 6.51e-01 100.0% 94.9%
3611555 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.85 80.0 6.02e-01 100.0% 74.8%
3709672 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.84 79.0 6.21e-01 100.0% 75.3%
3868746 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.82 76.0 5.63e-01 100.0% 65.6%
3893248 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.81 75.0 4.93e-01 100.0% 40.0%
4028492 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.81 75.0 6.16e-01 100.0% 92.6%
3518745 2006.1.4.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.76 72.0 5.89e-01 100.0% 68.4%
5041361 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.73 69.0 6.51e-01 100.0% 96.8%
5057506 304.3.1.11 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE 0.65 26.0 3.02e-01 97.0% 50.0%
4994951 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.64 53.0 5.39e-01 87.9% 100.0%
5029936 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.64 25.0 3.57e-01 95.5% 73.8%
4160431 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.63 50.0 4.36e-01 83.3% 95.3%
4038162 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.62 50.0 4.49e-01 85.6% 98.9%
4319375 2006.1.1.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C 0.62 49.0 4.31e-01 84.1% 95.9%
4973771 2007.1.14.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.61 54.0 4.78e-01 96.2% 77.9%
4199872 2007.1.14.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.61 50.0 4.49e-01 89.4% 73.0%
4972624 2007.1.14.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.60 52.0 5.01e-01 95.5% 92.3%
4162155 2006.1.1.41 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5-nucleotidase 0.60 50.0 3.82e-01 90.2% 98.7%
3899836 2006.1.1.41 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5-nucleotidase 0.59 45.0 4.26e-01 80.3% 97.4%
3584243 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.58 53.0 5.41e-01 95.5% 98.5%
1157912 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 40.0 3.66e-01 74.2% 91.8%
3723369 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 39.0 3.21e-01 75.0% 64.4%
4935739 2007.1.5.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.54 41.0 3.91e-01 80.3% 83.2%
5062843 2011.1.1.5 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 0.54 42.0 3.55e-01 85.6% 94.6%
4969200 2007.1.5.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.51 43.0 4.12e-01 91.7% 93.5%
3958702 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.50 36.0 2.75e-01 75.8% 84.0%
D3 medium residues 259-319
PDB
Domain cluster: rep: IMGVR_UViG_3300002053_001336-3300002053-SMTZ23_100214334__D204-271