DNA_replication_origin-binding_helicase

Euk-Vir

Psittacid_alphaherpesvirus_1

DNA_replication_origin-binding_helicase__NP_944431__Psittacid_alphaherpesvirus_1__50294

Identity

71.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Psittacid_alphaherpesvirus_1

TaxID: 50294

View cluster (36 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-229

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	342.4	7.70e-102	100.0%	22.7%
PF00270.36	DEAD	29.5	8.30e-07	85.3%	88.6%

D2 medium residues 239-256_289-417

PDB

Domain cluster: rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	236.7	6.80e-70	100.0%	18.8%

D3 medium residues 418-489

PDB

D4 medium residues 570-708

PDB

Domain cluster: rep: DNA_replication_origin-binding_helicase__NP_045350__Bovine_alphaherpesvirus_1__10320__D515-649

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	101.1	6.80e-29	100.0%	14.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hw0C00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	28.0	3.33e-01	89.2%	74.2%
2prrA02	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.52	27.0	2.80e-01	72.7%	48.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5038557	101.1.2.934 ↗	alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N	0.58	31.0	3.58e-01	89.2%	69.0%