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DNA_replication_origin-binding_helicase

Euk-Vir

Gallid_alphaherpesvirus_2

DNA_replication_origin-binding_helicase__YP_001033937__Gallid_alphaherpesvirus_2__10390

Identity

Accession:: YP_001033937 ↗
Protein ID:: DNA_replication_origin-binding_helicase
Kingdom:: euk

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-214

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	361.6	1.20e-107	100.0%	22.8%
PF00270.36	DEAD	32.8	7.80e-08	85.0%	88.6%

D2 medium residues 219-243_270-394_478-526

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	259.7	7.70e-77	76.4%	20.0%
PF02399.22	Herpes_ori_bp	42.0	5.00e-11	25.6%	6.0%

D3 medium residues 527-620

PDB

Domain cluster: rep: DNA_replication_origin-binding_helicase__YP_009010995__Chimpanzee_herpesvirus_strain_105640__332937__D557-613_637-650

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	107.7	7.20e-31	100.0%	11.3%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1w2qA01	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.62	40.0	3.76e-01	87.2%	54.0%
4hehA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.58	37.0	3.90e-01	85.1%	72.3%
1vr9A01	3.90.1280.20	Alpha Beta › Alpha-Beta Complex › CBS domain Like ›	0.57	30.0	3.53e-01	90.4%	73.4%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.57	41.0	3.94e-01	76.6%	90.8%
1vwxg01	6.20.370.70	Special › Other non-globular › Rhinovirus 14, subunit 4 ›	0.55	22.0	3.46e-01	97.9%	97.3%
3snxA00	1.25.40.390	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	44.0	2.86e-01	88.3%	84.6%
1o2dA01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	43.0	3.59e-01	90.4%	91.3%
7uzsX02	3.90.260.10	Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like	0.52	43.0	3.09e-01	91.5%	32.4%
7plsA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.52	41.0	2.84e-01	86.2%	30.8%
3qsgA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.51	43.0	4.06e-01	91.5%	86.1%
4k7cA01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.51	38.0	2.52e-01	79.8%	42.1%
4ezbA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.50	41.0	3.92e-01	92.6%	88.9%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605664	7516.1.1.0 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases	0.63	47.0	3.21e-01	78.7%	94.9%
4927916	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.59	25.0	2.97e-01	83.0%	54.0%
4002132	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.58	40.0	2.80e-01	71.3%	29.5%
3714115	7516.1.1.0 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases	0.58	42.0	2.87e-01	77.7%	84.1%
3719593	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	45.0	2.86e-01	87.2%	37.6%
3321517	2007.2.3.9 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase	0.54	47.0	3.12e-01	97.9%	63.6%
3587631	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.53	46.0	4.11e-01	100.0%	84.3%
3282565	7579.1.1.118 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, FrsA-like	0.52	44.0	2.95e-01	97.9%	65.6%
3216070	5001.1.1.44 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv	0.51	44.0	3.09e-01	97.9%	58.5%
4087557	7581.1.1.1 ↗	a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N	0.51	39.0	2.76e-01	81.9%	81.7%

D4 medium residues 621-737_788-801

PDB

D5 medium residues 738-787

PDB

Domain cluster: rep: DNA_replication_origin-binding_helicase_UL9__YP_009230139__Leporid_alphaherpesvirus_4__481315__D730-784

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	68.1	6.70e-19	100.0%	6.1%