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DNA_replication_origin-binding_helicase

Euk-Vir

Cervid_alphaherpesvirus_3

DNA_replication_origin-binding_helicase__YP_010087593__Cervid_alphaherpesvirus_3__2115790

Identity

Accession:: YP_010087593 ↗
Protein ID:: DNA_replication_origin-binding_helicase
Kingdom:: euk

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Cervid_alphaherpesvirus_3

TaxID: 2115790

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-238

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	302.5	8.80e-90	100.0%	23.1%
PF00270.36	DEAD	26.8	5.40e-06	83.7%	90.4%

D2 high residues 243-408_475-528

PDB

Domain cluster: rep: CP025712.1__AUO37541.1__YDC107_5424__00064__D413-546_602-643

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	228.6	2.00e-67	75.9%	20.4%
PF02399.22	Herpes_ori_bp	34.7	8.00e-09	25.4%	6.5%

D3 medium residues 409-474

PDB

Domain cluster: rep: DNA_replication_origin-binding_helicase__NP_040173__Human_alphaherpesvirus_3__10335__D393-453

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	86.1	2.40e-24	100.0%	7.9%

D4 medium residues 532-665

PDB

Domain cluster: rep: DNA_replication_origin-binding_helicase__YP_010084982__Beluga_whale_alphaherpesvirus_1__1434720__D546-648

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	79.9	1.80e-22	97.8%	13.8%

D5 medium residues 666-744

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02399.22 best	Herpes_ori_bp	34.8	7.70e-09	100.0%	9.4%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dznF00	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.64	36.0	3.87e-01	84.8%	63.8%
2kj8A00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.61	31.0	2.73e-01	70.9%	32.2%
2yqzA02	1.10.8.900	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.59	32.0	3.41e-01	70.9%	60.3%
1wy9A00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.57	43.0	3.88e-01	82.3%	86.5%
3au5A03	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.56	49.0	4.38e-01	98.7%	98.2%
3vw4A01	1.10.340.50	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 ›	0.55	34.0	3.26e-01	72.2%	53.3%
2oo2A00	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.54	42.0	4.33e-01	89.9%	86.8%
3cnlA02	1.10.1580.10	Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 ›	0.53	42.0	4.09e-01	92.4%	78.0%
1v5kA00	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.51	44.0	3.93e-01	100.0%	95.7%
3bkhA02	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.51	38.0	3.03e-01	83.5%	50.0%
2grjA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	41.0	3.26e-01	92.4%	96.1%
1qamA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.50	36.0	3.62e-01	94.9%	76.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4997475	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.55	44.0	2.99e-01	86.1%	96.1%
5008138	169.1.1.1 ↗	alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C	0.52	41.0	2.65e-01	86.1%	20.0%
3737699	2004.1.1.272 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA12	0.51	42.0	3.00e-01	88.6%	30.9%
5027497	632.6.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit	0.51	42.0	4.28e-01	91.1%	91.3%