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DNA_topoisomerase_1b
Euk-VirAcanthamoeba_polyphaga_moumouvirus
DNA_topoisomerase_1b__YP_007354733__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007354733 ↗
- Protein ID:
- DNA_topoisomerase_1b
- Kingdom:
- euk
Quality
76.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-223
Domain cluster:
rep: pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00118__D10-213
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02919.21 best | Topoisom_I_N | 247.3 | 1.70e-73 | 100.0% | 94.4% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jrfA03 | 1.10.20.150 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.50 | 22.0 | 2.82e-01 | 80.9% | 67.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599064 | 4039.1.1.0 ↗ | beta complex topology › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 0.78 | 46.0 | 5.32e-01 | 100.0% | 80.0% |
| 5073641 | 4039.1.1.1 ↗ | beta complex topology › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Topoisom_I_N | 0.75 | 44.0 | 5.42e-01 | 100.0% | 90.4% |
| 3784781 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.52 | 21.0 | 3.16e-01 | 96.9% | 90.7% |
D2
high
residues 233-374
Domain cluster:
rep: S16_GE16_scaffold_10741_prodigal-single.1__X__X__00162__D901-1023
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01028.26 best | Topoisom_I | 186.8 | 5.50e-55 | 100.0% | 61.8% |
D3
medium
residues 378-533
Domain cluster:
rep: putative_DNA_topoisomerase_IB__YP_003969784__Cafeteria_roenbergensis_virus_BV-PW1__693272__D380-494
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01028.26 best | Topoisom_I | 63.9 | 2.10e-17 | 54.5% | 33.8% |
| PF14370.12 | Topo_C_assoc | 93.8 | 6.10e-27 | 39.1% | 85.7% |