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DNA_topoisomerase_2
Euk-VirAcanthamoeba_polyphaga_moumouvirus
DNA_topoisomerase_2__YP_007353996__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007353996 ↗
- Protein ID:
- DNA_topoisomerase_2
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-77
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1hB01 | 1.20.58.540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 41.0 | 3.49e-01 | 83.6% | 39.8% |
| 6zzx601 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.56 | 40.0 | 2.83e-01 | 86.9% | 22.1% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.55 | 37.0 | 2.60e-01 | 72.1% | 79.1% |
| 2j1dG01 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.51 | 42.0 | 2.68e-01 | 98.4% | 78.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4370976 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.86 | 66.0 | 4.79e-01 | 82.0% | 33.5% |
| 1165372 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.84 | 60.0 | 4.54e-01 | 75.4% | 33.3% |
| 3786685 | 1128.1.1.7 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF27708 | 0.59 | 40.0 | 2.82e-01 | 70.5% | 30.0% |
| 3701791 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.59 | 43.0 | 3.03e-01 | 77.0% | 26.2% |
| 3583377 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.57 | 39.0 | 3.93e-01 | 75.4% | 78.5% |
| 4942666 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.54 | 43.0 | 3.11e-01 | 88.5% | 83.2% |
| 4099147 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 43.0 | 2.67e-01 | 98.4% | 32.1% |