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DNA_topoisomerase_I
Euk-VirPhaeocystis_globosa_virus
DNA_topoisomerase_I__YP_008052594__Phaeocystis_globosa_virus__251749
Identity
- Accession:
- YP_008052594 ↗
- Protein ID:
- DNA_topoisomerase_I
- Kingdom:
- euk
Quality
75.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prymnesiovirus›
Phaeocystis_globosa_virus
TaxID: 251749
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 727-784
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.63 | 52.0 | 3.34e-01 | 96.6% | 22.7% |
| 4k22A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.62 | 43.0 | 3.60e-01 | 74.1% | 63.0% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.61 | 43.0 | 3.36e-01 | 75.9% | 87.2% |
| 1e88A03 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.61 | 38.0 | 4.37e-01 | 98.3% | 88.1% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.60 | 43.0 | 2.78e-01 | 100.0% | 15.2% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 38.0 | 3.20e-01 | 91.4% | 35.2% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 41.0 | 3.74e-01 | 74.1% | 60.2% |
| 3hrpA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 51.0 | 3.29e-01 | 100.0% | 24.3% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.59 | 51.0 | 4.33e-01 | 100.0% | 77.0% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 42.0 | 3.38e-01 | 75.9% | 40.5% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 49.0 | 4.20e-01 | 100.0% | 82.7% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.58 | 50.0 | 4.18e-01 | 100.0% | 76.0% |
| 1h8mA00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.57 | 46.0 | 3.73e-01 | 100.0% | 82.9% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 41.0 | 3.35e-01 | 81.0% | 87.7% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 37.0 | 3.24e-01 | 100.0% | 40.4% |
| 2dmwA01 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.56 | 46.0 | 3.83e-01 | 98.3% | 87.9% |
| 3gceA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 49.0 | 4.09e-01 | 100.0% | 63.5% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 48.0 | 3.46e-01 | 98.3% | 43.9% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 41.0 | 3.33e-01 | 81.0% | 90.0% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 2.94e-01 | 100.0% | 35.6% |
| 5cxmA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 45.0 | 3.90e-01 | 94.8% | 86.9% |
| 4bdxA00 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.55 | 39.0 | 3.53e-01 | 75.9% | 71.1% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 37.0 | 3.05e-01 | 89.7% | 35.6% |
| 2gzbB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 38.0 | 2.88e-01 | 77.6% | 98.2% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 38.0 | 3.73e-01 | 74.1% | 74.6% |
| 4qdiA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.54 | 44.0 | 3.03e-01 | 96.6% | 35.4% |
| 1wiiA01 | 2.20.25.190 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 43.0 | 4.27e-01 | 93.1% | 88.7% |
| 4g2sA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 46.0 | 3.77e-01 | 96.6% | 70.8% |
| 1ynjJ02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 42.0 | 4.20e-01 | 87.9% | 83.9% |
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.51 | 43.0 | 3.49e-01 | 96.6% | 71.8% |
| 1hkgA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 38.0 | 3.16e-01 | 89.7% | 41.5% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 42.0 | 2.88e-01 | 98.3% | 27.8% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 34.0 | 3.63e-01 | 91.4% | 91.1% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.50 | 40.0 | 3.72e-01 | 93.1% | 92.2% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 3.91e-01 | 98.3% | 87.1% |
| 1dobA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.50 | 39.0 | 3.11e-01 | 96.6% | 95.9% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4259070 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.73 | 57.0 | 6.02e-01 | 98.3% | 100.0% |
| 3921576 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.69 | 48.0 | 3.58e-01 | 84.5% | 30.0% |
| 4182769 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.68 | 60.0 | 5.98e-01 | 100.0% | 98.3% |
| 3577264 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.67 | 47.0 | 3.47e-01 | 84.5% | 28.7% |
| 5065441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 44.0 | 4.57e-01 | 70.7% | 100.0% |
| 3789602 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 46.0 | 3.56e-01 | 86.2% | 35.2% |
| 3809935 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.64 | 54.0 | 3.32e-01 | 98.3% | 17.7% |
| 3315072 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.62 | 52.0 | 5.12e-01 | 100.0% | 96.9% |
| 3708200 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 48.0 | 4.29e-01 | 86.2% | 92.9% |
| 4847379 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.62 | 54.0 | 3.42e-01 | 100.0% | 24.4% |
| 3928506 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.61 | 36.0 | 3.22e-01 | 93.1% | 38.8% |
| 3473908 | 220.1.1.157 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29715 | 0.61 | 44.0 | 3.23e-01 | 79.3% | 27.3% |
| 4872607 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.61 | 46.0 | 3.76e-01 | 84.5% | 43.2% |
| 3186255 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.61 | 41.0 | 2.65e-01 | 72.4% | 41.9% |
| 3665481 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.59 | 39.0 | 4.24e-01 | 93.1% | 86.7% |
| 4457771 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.59 | 44.0 | 4.02e-01 | 79.3% | 76.0% |
| 4028185 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.58 | 40.0 | 4.22e-01 | 72.4% | 92.0% |
| 3280385 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.58 | 41.0 | 4.21e-01 | 75.9% | 80.0% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.58 | 40.0 | 3.46e-01 | 72.4% | 47.8% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 40.0 | 3.74e-01 | 74.1% | 60.0% |
| 3640540 | 5.1.4.97 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop | 0.57 | 47.0 | 2.89e-01 | 100.0% | 18.7% |
| 5002276 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.57 | 42.0 | 3.96e-01 | 82.8% | 66.7% |
| 4964178 | 319.1.1.29 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF7127 | 0.57 | 42.0 | 3.93e-01 | 86.2% | 64.4% |
| 3579675 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 49.0 | 3.92e-01 | 100.0% | 57.5% |
| 4064214 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 45.0 | 4.42e-01 | 89.7% | 84.6% |
| 3500033 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 39.0 | 4.13e-01 | 72.4% | 86.0% |
| 4948153 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 47.0 | 4.47e-01 | 96.6% | 81.4% |
| 3219546 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.56 | 48.0 | 3.64e-01 | 100.0% | 50.7% |
| 4926892 | 220.1.1.87 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 | 0.55 | 47.0 | 3.86e-01 | 100.0% | 64.3% |
| 4126006 | 325.1.7.14 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid | 0.55 | 45.0 | 4.33e-01 | 89.7% | 84.6% |
| 3208203 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.55 | 38.0 | 3.92e-01 | 72.4% | 76.4% |
| 4960622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 37.0 | 3.28e-01 | 89.7% | 44.2% |
| 3271259 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 47.0 | 4.23e-01 | 100.0% | 89.4% |
| 5031493 | 319.1.1.23 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 | 0.55 | 41.0 | 3.82e-01 | 84.5% | 65.4% |
| 4463778 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.55 | 43.0 | 3.45e-01 | 87.9% | 88.3% |
| 4235146 | 129.1.1.2 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH | 0.55 | 34.0 | 2.61e-01 | 96.6% | 24.8% |
| 3705938 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.55 | 46.0 | 3.76e-01 | 100.0% | 56.7% |
| 4034138 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.54 | 44.0 | 3.55e-01 | 100.0% | 79.7% |
| 3510695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 36.0 | 3.35e-01 | 89.7% | 51.2% |
| 3386077 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.54 | 39.0 | 4.19e-01 | 89.7% | 100.0% |
| 4188283 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 41.0 | 3.81e-01 | 87.9% | 85.0% |
| 4933213 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.53 | 44.0 | 4.20e-01 | 96.6% | 81.4% |
| 3396193 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 41.0 | 3.24e-01 | 89.7% | 38.5% |
| 3331569 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.53 | 38.0 | 3.90e-01 | 75.9% | 90.9% |
| 3998167 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.53 | 45.0 | 2.97e-01 | 94.8% | 37.2% |
| 4414068 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 37.0 | 2.49e-01 | 75.9% | 48.6% |
| 4930329 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 35.0 | 3.77e-01 | 82.8% | 82.0% |
| 5039400 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.53 | 39.0 | 2.59e-01 | 86.2% | 17.3% |
| 3199763 | 220.1.1.202 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N | 0.53 | 44.0 | 3.55e-01 | 100.0% | 55.2% |
| 3224448 | 4967.1.1.35 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › PF28867 | 0.52 | 46.0 | 2.92e-01 | 100.0% | 27.2% |
| 3173088 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.52 | 40.0 | 2.99e-01 | 91.4% | 30.6% |
| 3947909 | 2004.1.1.236 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21,AAA_23 | 0.52 | 44.0 | 2.69e-01 | 94.8% | 26.7% |
| 3656396 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.52 | 45.0 | 3.30e-01 | 100.0% | 49.1% |
| 3949260 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.52 | 38.0 | 3.11e-01 | 79.3% | 90.0% |
| 4961948 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.51 | 41.0 | 3.31e-01 | 91.4% | 54.2% |
| 3580415 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.50 | 36.0 | 2.38e-01 | 81.0% | 32.5% |
| 3508085 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.50 | 35.0 | 3.43e-01 | 79.3% | 66.2% |
| 3408090 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.50 | 34.0 | 3.28e-01 | 77.6% | 60.0% |
D2
medium
residues 3-127
Domain cluster:
rep: IMGVR_UViG_3300014887_000003-3300014887-Ga0180302_1000002739__D2-143
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01751.29 best | Toprim | 81.3 | 6.50e-23 | 87.2% | 100.0% |
| PF13662.13 | Toprim_4 | 31.2 | 2.90e-07 | 84.8% | 89.2% |
D3
medium
residues 165-191_460-504_530-562
Domain cluster:
rep: DNA_topoisomerase_1__YP_003986717__Acanthamoeba_polyphaga_mimivirus__212035__D157-185_471-514_550-565
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01131.26 best | Topoisom_bac | 70.5 | 1.90e-19 | 80.0% | 18.2% |
CATH (86)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.93 | 83.0 | 6.91e-01 | 100.0% | 59.5% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.91 | 80.0 | 6.84e-01 | 100.0% | 61.5% |
| 4cgyA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.88 | 80.0 | 6.36e-01 | 100.0% | 52.6% |
| 2fa5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 57.0 | 5.17e-01 | 89.5% | 54.0% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 57.0 | 6.03e-01 | 87.6% | 78.9% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 58.0 | 5.37e-01 | 88.6% | 58.9% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 48.0 | 6.12e-01 | 70.5% | 100.0% |
| 5zr6A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 44.0 | 5.82e-01 | 70.5% | 100.0% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 55.0 | 6.18e-01 | 85.7% | 90.5% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 53.0 | 6.02e-01 | 82.9% | 90.2% |
| 1jgsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 60.0 | 5.37e-01 | 88.6% | 60.9% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 49.0 | 5.41e-01 | 71.4% | 79.1% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 59.0 | 5.17e-01 | 89.5% | 56.0% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 58.0 | 6.33e-01 | 87.6% | 96.5% |
| 4b8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 58.0 | 5.24e-01 | 90.5% | 60.0% |
| 4mqvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 47.0 | 5.79e-01 | 76.2% | 100.0% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 59.0 | 5.16e-01 | 89.5% | 57.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 58.0 | 6.27e-01 | 94.3% | 94.4% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 58.0 | 5.23e-01 | 89.5% | 62.0% |
| 5bpdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 44.0 | 5.11e-01 | 73.3% | 82.7% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 56.0 | 6.13e-01 | 87.6% | 95.4% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 45.0 | 5.15e-01 | 76.2% | 82.1% |
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 46.0 | 5.68e-01 | 73.3% | 100.0% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 56.0 | 5.03e-01 | 89.5% | 59.3% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 44.0 | 5.49e-01 | 71.4% | 100.0% |
| 1jhfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 47.0 | 5.72e-01 | 74.3% | 100.0% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 43.0 | 5.47e-01 | 70.5% | 98.4% |
| 3aafA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 6.03e-01 | 87.6% | 95.4% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 56.0 | 6.12e-01 | 82.9% | 97.7% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 58.0 | 5.36e-01 | 94.3% | 66.7% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 50.0 | 5.61e-01 | 82.9% | 94.9% |
| 2f2eA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 57.0 | 6.13e-01 | 94.3% | 96.7% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 57.0 | 5.10e-01 | 88.6% | 61.7% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 45.0 | 4.95e-01 | 73.3% | 77.0% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 58.0 | 5.82e-01 | 91.4% | 84.8% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.96e-01 | 87.6% | 91.7% |
| 4rayA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 5.26e-01 | 74.3% | 84.7% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 55.0 | 5.69e-01 | 89.5% | 85.0% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 5.63e-01 | 93.3% | 85.9% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 55.0 | 4.95e-01 | 88.6% | 61.0% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.72e-01 | 87.6% | 84.0% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 42.0 | 5.23e-01 | 71.4% | 96.9% |
| 2dk5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 44.0 | 5.39e-01 | 71.4% | 100.0% |
| 3broD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 56.0 | 5.19e-01 | 94.3% | 66.4% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 44.0 | 4.96e-01 | 77.1% | 82.5% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 48.0 | 5.20e-01 | 74.3% | 82.4% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 46.0 | 5.46e-01 | 82.9% | 98.6% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.69 | 51.0 | 5.78e-01 | 76.2% | 100.0% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 44.0 | 5.07e-01 | 72.4% | 89.3% |
| 4gcvC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 55.0 | 4.91e-01 | 92.4% | 61.7% |
| 2h09A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 42.0 | 4.96e-01 | 71.4% | 90.1% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 58.0 | 5.97e-01 | 95.2% | 93.1% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 5.34e-01 | 88.6% | 76.0% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 5.62e-01 | 84.8% | 100.0% |
| 3f6oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 47.0 | 5.04e-01 | 81.9% | 81.3% |
| 3go5A04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 41.0 | 5.11e-01 | 70.5% | 100.0% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 42.0 | 5.16e-01 | 73.3% | 98.5% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 48.0 | 5.32e-01 | 78.1% | 88.5% |
| 2oqgB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 47.0 | 4.65e-01 | 81.9% | 68.5% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 58.0 | 5.89e-01 | 97.1% | 91.4% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 43.0 | 4.76e-01 | 73.3% | 80.0% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 5.46e-01 | 87.6% | 88.8% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 45.0 | 4.60e-01 | 79.0% | 70.2% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 5.11e-01 | 82.9% | 86.5% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 5.29e-01 | 84.8% | 85.1% |
| 3bpvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 58.0 | 5.27e-01 | 93.3% | 75.2% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 5.40e-01 | 86.7% | 100.0% |
| 2jt1A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 44.0 | 5.14e-01 | 74.3% | 100.0% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 43.0 | 4.89e-01 | 70.5% | 92.0% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.92e-01 | 89.5% | 70.1% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 58.0 | 5.15e-01 | 93.3% | 75.4% |
| 3edpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 40.0 | 4.59e-01 | 74.3% | 85.5% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 55.0 | 5.52e-01 | 92.4% | 94.3% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 38.0 | 4.63e-01 | 71.4% | 95.4% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 54.0 | 4.87e-01 | 91.4% | 67.1% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 59.0 | 4.99e-01 | 100.0% | 63.7% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 5.11e-01 | 91.4% | 85.0% |
| 2p4wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 4.70e-01 | 85.7% | 77.7% |
| 2hs5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 38.0 | 4.52e-01 | 71.4% | 94.0% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 38.0 | 4.48e-01 | 70.5% | 89.0% |
| 4g9yA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 58.0 | 5.26e-01 | 100.0% | 78.7% |
| 4xrfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 57.0 | 5.10e-01 | 99.0% | 76.8% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 4.89e-01 | 84.8% | 94.1% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.37e-01 | 78.1% | 71.6% |
| 6az1a00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 37.0 | 4.32e-01 | 72.4% | 87.5% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 54.0 | 5.50e-01 | 97.1% | 97.1% |
ECOD (88)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4369057 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.95 | 85.0 | 7.04e-01 | 100.0% | 58.8% |
| 4264627 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.94 | 84.0 | 6.77e-01 | 100.0% | 53.9% |
| 4956004 | 2004.1.1.1195 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Topoisom_bac | 0.94 | 81.0 | 5.16e-01 | 100.0% | 23.0% |
| 3614788 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.93 | 84.0 | 5.53e-01 | 100.0% | 27.2% |
| 4971257 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.92 | 81.0 | 6.44e-01 | 100.0% | 51.4% |
| 3704475 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.92 | 84.0 | 6.37e-01 | 100.0% | 46.0% |
| 5055121 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.92 | 81.0 | 6.37e-01 | 100.0% | 49.2% |
| 4988773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.92 | 75.0 | 6.51e-01 | 100.0% | 59.3% |
| 4943300 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.92 | 82.0 | 6.58e-01 | 100.0% | 53.9% |
| 3963197 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.92 | 85.0 | 6.66e-01 | 100.0% | 51.8% |
| 3654747 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.91 | 66.0 | 5.90e-01 | 78.1% | 57.0% |
| 4942681 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.91 | 84.0 | 6.70e-01 | 100.0% | 54.1% |
| 4969405 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.91 | 80.0 | 6.49e-01 | 100.0% | 53.3% |
| 4442595 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.91 | 86.0 | 5.76e-01 | 100.0% | 31.4% |
| 3593805 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.91 | 86.0 | 5.59e-01 | 100.0% | 26.8% |
| 5003642 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.91 | 82.0 | 5.52e-01 | 100.0% | 29.6% |
| 5083713 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.90 | 63.0 | 5.98e-01 | 77.1% | 62.5% |
| 5022395 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.90 | 85.0 | 7.04e-01 | 100.0% | 61.8% |
| 3587546 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.90 | 77.0 | 6.51e-01 | 100.0% | 58.1% |
| 5054506 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.90 | 84.0 | 6.56e-01 | 100.0% | 51.8% |
| 5008813 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.90 | 79.0 | 6.62e-01 | 100.0% | 58.2% |
| 4930522 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.90 | 82.0 | 6.59e-01 | 100.0% | 55.0% |
| 5003459 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.89 | 80.0 | 6.41e-01 | 100.0% | 53.0% |
| 4534098 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.89 | 82.0 | 6.68e-01 | 100.0% | 57.7% |
| 5023989 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.88 | 65.0 | 6.32e-01 | 81.0% | 69.9% |
| 4933038 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.88 | 80.0 | 6.49e-01 | 100.0% | 55.6% |
| 5062049 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.88 | 84.0 | 6.94e-01 | 100.0% | 61.8% |
| 4976528 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.87 | 82.0 | 6.51e-01 | 100.0% | 54.2% |
| 3655172 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.87 | 84.0 | 6.51e-01 | 100.0% | 60.5% |
| 3838276 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.87 | 83.0 | 6.60e-01 | 100.0% | 62.6% |
| 3180020 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.87 | 79.0 | 6.35e-01 | 100.0% | 54.1% |
| 3171118 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 83.0 | 6.30e-01 | 100.0% | 51.6% |
| 4456203 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 82.0 | 6.21e-01 | 100.0% | 56.8% |
| 5000448 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 81.0 | 6.23e-01 | 100.0% | 49.5% |
| 4971669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 63.0 | 5.63e-01 | 87.6% | 61.4% |
| 5005196 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 58.0 | 6.55e-01 | 88.6% | 100.0% |
| 5010793 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.78 | 54.0 | 6.40e-01 | 83.8% | 100.0% |
| 5041057 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 55.0 | 5.76e-01 | 78.1% | 81.1% |
| 5077087 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 60.0 | 6.27e-01 | 89.5% | 90.5% |
| 5067775 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 54.0 | 5.95e-01 | 83.8% | 89.4% |
| 5040871 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 55.0 | 6.29e-01 | 85.7% | 98.8% |
| 5039088 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.75 | 53.0 | 4.70e-01 | 84.8% | 52.4% |
| 3472278 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.75 | 52.0 | 6.06e-01 | 78.1% | 100.0% |
| 2602 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.74 | 55.0 | 5.23e-01 | 89.5% | 66.4% |
| 4649222 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.74 | 59.0 | 5.44e-01 | 94.3% | 66.9% |
| 4980177 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.74 | 54.0 | 5.15e-01 | 86.7% | 65.8% |
| 1291586 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.74 | 59.0 | 5.35e-01 | 94.3% | 63.3% |
| 5076076 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.74 | 63.0 | 6.02e-01 | 93.3% | 79.2% |
| 3716076 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.73 | 52.0 | 6.00e-01 | 82.9% | 100.0% |
| 5044288 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 50.0 | 5.67e-01 | 73.3% | 92.5% |
| 4068860 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.73 | 54.0 | 5.12e-01 | 85.7% | 66.7% |
| 3773922 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.73 | 47.0 | 4.11e-01 | 75.2% | 46.0% |
| 4952882 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 49.0 | 5.50e-01 | 72.4% | 90.0% |
| None | — | 0.72 | 50.0 | 5.68e-01 | 76.2% | 93.8% | |
| 4946699 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 6.26e-01 | 93.3% | 100.0% |
| 3571824 | 101.1.2.601 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH | 0.72 | 47.0 | 3.67e-01 | 76.2% | 32.6% |
| 3876302 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.72 | 50.0 | 5.02e-01 | 77.1% | 70.5% |
| 4665743 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 53.0 | 5.33e-01 | 84.8% | 77.1% |
| 3962953 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.71 | 51.0 | 4.92e-01 | 82.9% | 67.0% |
| 3554511 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.71 | 47.0 | 5.34e-01 | 76.2% | 90.0% |
| 3404571 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.71 | 47.0 | 5.29e-01 | 73.3% | 88.7% |
| 3951002 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.70 | 51.0 | 4.67e-01 | 82.9% | 58.5% |
| 4961822 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 52.0 | 5.62e-01 | 85.7% | 91.1% |
| 4999532 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.70 | 62.0 | 4.62e-01 | 93.3% | 68.1% |
| 3388122 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 51.0 | 5.37e-01 | 83.8% | 85.3% |
| 3280999 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.69 | 48.0 | 4.15e-01 | 78.1% | 47.7% |
| 3787973 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.69 | 53.0 | 4.67e-01 | 80.0% | 70.0% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.69 | 50.0 | 5.05e-01 | 75.2% | 79.0% |
| 5013440 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 52.0 | 4.69e-01 | 84.8% | 59.3% |
| 4959456 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 63.0 | 5.32e-01 | 100.0% | 64.1% |
| 4524417 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 54.0 | 5.69e-01 | 87.6% | 92.6% |
| 4887378 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.68 | 64.0 | 5.28e-01 | 98.1% | 71.5% |
| 3321732 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 55.0 | 5.61e-01 | 85.7% | 94.0% |
| 5021067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 58.0 | 5.81e-01 | 95.2% | 92.4% |
| 5017399 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.67 | 60.0 | 5.25e-01 | 97.1% | 66.7% |
| 4978790 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 58.0 | 5.82e-01 | 94.3% | 91.7% |
| 3579249 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 43.0 | 4.69e-01 | 75.2% | 80.0% |
| 3838246 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 4.84e-01 | 84.8% | 74.5% |
| 4973783 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 52.0 | 5.44e-01 | 86.7% | 92.6% |
| 5047364 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.66 | 56.0 | 5.55e-01 | 93.3% | 87.3% |
| 4399101 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.65 | 49.0 | 4.87e-01 | 84.8% | 75.5% |
| 3473498 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 48.0 | 5.28e-01 | 79.0% | 95.3% |
| 1888715 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.64 | 59.0 | 5.39e-01 | 100.0% | 75.7% |
| 3971712 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.64 | 58.0 | 5.35e-01 | 96.2% | 77.7% |
| 3439642 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 56.0 | 5.11e-01 | 96.2% | 90.0% |
| 3809863 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 55.0 | 4.88e-01 | 95.2% | 84.7% |
| 3250084 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 4.79e-01 | 80.0% | 89.5% |
| 4964911 | 101.1.2.920 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C | 0.59 | 46.0 | 4.39e-01 | 85.7% | 69.6% |
D4
medium
residues 192-235_403-417_446-459_505-529
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cgyA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.67 | 47.0 | 4.38e-01 | 73.5% | 97.7% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 20.0 | 3.40e-01 | 85.7% | 85.3% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.61 | 31.0 | 3.11e-01 | 99.0% | 47.1% |
| 3hrpA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 3.47e-01 | 84.7% | 58.9% |
| 1lvoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 35.0 | 3.68e-01 | 91.8% | 77.3% |
| 1jllB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 38.0 | 3.29e-01 | 79.6% | 71.6% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.51 | 43.0 | 3.67e-01 | 98.0% | 66.9% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.50 | 38.0 | 4.11e-01 | 85.7% | 95.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5057274 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 35.0 | 3.74e-01 | 83.7% | 65.9% |
| 3399490 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.58 | 32.0 | 3.72e-01 | 71.4% | 76.9% |
| 5023404 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.53 | 30.0 | 2.33e-01 | 90.8% | 24.4% |
D5
medium
residues 236-324_343-402_418-445
Domain cluster:
rep: KX077896.1__ANM47700.1__X__00069__D72-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01131.26 best | Topoisom_bac | 132.7 | 2.60e-38 | 95.5% | 36.4% |
D6
medium
residues 606-721